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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TGT
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.586971 (1 seq.)
>FG090100382
AL590448
Microsporidia
Encephalitozoon_cuniculi_GB-M1
200355
200281
-
Thr
TGT
[ENA]
¡û
Identical group No.597172 (1 seq.)
>FG091900189
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
559251
559336
+
Thr
TGT
[ENA]
¡û
Identical group No.659358 (10 seq.)
>WENV182597873
OJJC01003738
[OJJC] metagenome; faeces
325
398
+
Thr
TGT
[ENA]
¢þ
>WENV182629522
OJKS01027105
[OJKS] metagenome; surface
235
308
+
Thr
TGT
[ENA]
¢þ
>WENV170659497
JXWR01007197
[JXWR] soil metagenome; rice field; ambient CO2
24937
24866
-
Thr
TGT
[ENA]
¢þ
>WENV170659625
JXWR01015684
[JXWR] soil metagenome; rice field; ambient CO2
48
119
+
Thr
TGT
[ENA]
¢þ
>FG090100078
CR380948
Ascomycota
Candida glabrata CBS 138 CBS138
399906
399979
+
Thr
TGT
[ENA]
¡û
>FG090100123
CR380953
Ascomycota
Candida glabrata CBS 138 CBS138
275526
275599
+
Thr
TGT
[ENA]
¡û
>FG090100219
CR380959
Ascomycota
Candida glabrata CBS 138 CBS138
1309738
1309811
+
Thr
TGT
[ENA]
¡û
>FG090100405
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
810511
810584
+
Thr
TGT
[ENA]
¡û
>FG090100449
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1247370
1247443
+
Thr
TGT
[ENA]
¡û
>SC0100098
NC_001140
Ascomycota
Saccharomyces cerevisiae S288c
466990
467061
+
Thr
TGT
[ENA]
¡û
Identical group No.675937 (1 seq.)
>FG091100021
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
756653
756726
+
Thr
TGT
[ENA]
¡û
Identical group No.698770 (1 seq.)
>FG090100612
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1503952
1504025
+
Thr
TGT
[ENA]
¡û
Identical group No.718797 (7 seq.)
>WENV170659587
JXWR01011160
[JXWR] soil metagenome; rice field; ambient CO2
1157
1228
+
Thr
TGT
[ENA]
¢þ
>WENV170659604
JXWR01013281
[JXWR] soil metagenome; rice field; ambient CO2
360
287
-
Thr
TGT
[ENA]
¢þ
>SC0100075
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
661752
661825
+
Thr
TGT
[ENA]
¡û
>SC0100085
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
1004221
1004294
+
Thr
TGT
[ENA]
¡û
>SC0100201
NC_001148
Ascomycota
Saccharomyces cerevisiae S288c
744282
744353
+
Thr
TGT
[ENA]
¡û
>W1610134730
FABQ01002176
Bacillota
Clostridioides difficile [FABQ]
204
133
-
Thr
TGT
[ENA]
¡û
>W1710136397
FABQ01002176
Bacillota
Clostridioides difficile [FABQ]
204
133
-
Thr
TGT
[ENA]
¡û
Identical group No.721383 (1 seq.)
>FG091900307
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3265745
3265661
-
Thr
TGT
[ENA]
¡û
Identical group No.735072 (3 seq.)
>FG090100345
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1951439
1951510
+
Thr
TGT
[ENA]
¡û
>FG090100512
CM000437
Ascomycota
Pichia stipitis CBS 6054
1673517
1673588
+
Thr
TGT
[ENA]
¡û
>FG091100089
CP000497
Ascomycota
Pichia stipitis CBS 6054
1390601
1390672
+
Thr
TGT
[ENA]
¡û
Identical group No.735073 (1 seq.)
>FG090100348
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1559545
1559474
-
Thr
TGT
[ENA]
¡û
Identical group No.741431 (1 seq.)
>FG090100672
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1361162
1361089
-
Thr
TGT
[ENA]
¡û
Identical group No.752676 (3 seq.)
>FG090200012
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
376708
376625
-
Thr
TGT
[ENA]
¡û
>FU090900205
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
376708
376625
-
Thr
TGT
[ENA]
¡û
>FG091900256
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
2031974
2032063
+
Thr
TGT
[ENA]
¡û
Identical group No.762145 (1 seq.)
>FG091100036
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
665495
665566
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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