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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TTT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.251193 (1 seq.)
>FG090100644
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
602699
602625
-
Lys
TTT
[ENA]
¡û
Identical group No.254972 (2 seq.)
>FG092110008
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
2441963
2442037
+
Lys
TTT
[ENA]
¡û
>FG092110031
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
1733838
1733764
-
Lys
TTT
[ENA]
¡û
Identical group No.281005 (1 seq.)
>FG091900209
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1126736
1126826
+
Lys
TTT
[ENA]
¡û
Identical group No.510147 (5 seq.)
>FG090500013
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
501680
501773
+
Lys
TTT
[ENA]
¡û
>FU090900208
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
501680
501772
+
Lys
TTT
[ENA]
¡û
>FU090900249
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2447822
2447730
-
Lys
TTT
[ENA]
¡û
>FG091900285
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
1663817
1663909
+
Lys
TTT
[ENA]
¡û
>FG091900300
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3665116
3665024
-
Lys
TTT
[ENA]
¡û
Identical group No.541153 (14 seq.)
>FU090900025
CR380950
Ascomycota
Candida glabrata CBS 138 CBS138
447843
447929
+
Lys
TTT
[ENA]
¡û
>FU090900049
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
1105731
1105817
+
Lys
TTT
[ENA]
¡û
>FU090900051
CR380959
Ascomycota
Candida glabrata CBS 138 CBS138
1091598
1091512
-
Lys
TTT
[ENA]
¡û
>FU090900136
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
301073
301162
+
Lys
TTT
[ENA]
¡û
>FU090900142
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1311170
1311081
-
Lys
TTT
[ENA]
¡û
>FU090900149
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
120819
120908
+
Lys
TTT
[ENA]
¡û
>FU090900155
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1515694
1515783
+
Lys
TTT
[ENA]
¡û
>SC0800002
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
359577
359672
+
Lys
TTT
[ENA]
¡û
>SC0800005
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
115492
115587
+
Lys
TTT
[ENA]
¡û
>SC0800007
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
701052
700957
-
Lys
TTT
[ENA]
¡û
>SC0800011
NC_001143
Ascomycota
Saccharomyces cerevisiae S288c
578607
578702
+
Lys
TTT
[ENA]
¡û
>SC0800014
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
875375
875470
+
Lys
TTT
[ENA]
¡û
>SC0800018
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
438645
438740
+
Lys
TTT
[ENA]
¡û
>SC0800021
NC_001148
Ascomycota
Saccharomyces cerevisiae S288c
769300
769205
-
Lys
TTT
[ENA]
¡û
Identical group No.541200 (7 seq.)
>FU090900103
CR382137
Ascomycota
Debaryomyces hansenii CBS767
220403
220503
+
Lys
TTT
[ENA]
¡û
>FU090900107
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1271114
1271014
-
Lys
TTT
[ENA]
¡û
>FU090900125
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1809622
1809722
+
Lys
TTT
[ENA]
¡û
>FU090900128
CR382139
Ascomycota
Debaryomyces hansenii CBS767
879305
879205
-
Lys
TTT
[ENA]
¡û
>FG091900316
CR382133
Ascomycota
Debaryomyces hansenii CBS767
536941
536841
-
Lys
TTT
[ENA]
¡û
>FG091900317
CR382135
Ascomycota
Debaryomyces hansenii CBS767
580375
580475
+
Lys
TTT
[ENA]
¡û
>FG091900320
CR382136
Ascomycota
Debaryomyces hansenii CBS767
1419833
1419733
-
Lys
TTT
[ENA]
¡û
Identical group No.597165 (3 seq.)
>FG090800074
CM000437
Ascomycota
Pichia stipitis CBS 6054
2421592
2421692
+
Lys
TTT
[ENA]
¡û
>FU090900166
CM000437
Ascomycota
Pichia stipitis CBS 6054
1344360
1344260
-
Lys
TTT
[ENA]
¡û
>FU090900183
CP000501
Ascomycota
Pichia stipitis CBS 6054
234302
234213
-
Lys
TTT
[ENA]
¡û
Identical group No.597171 (1 seq.)
>FG091900163
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
519416
519327
-
Lys
TTT
[ENA]
¡û
Identical group No.622058 (1 seq.)
>FG090100375
AL590447
Microsporidia
Encephalitozoon_cuniculi_GB-M1
172081
172153
+
Lys
TTT
[ENA]
¡û
Identical group No.629599 (2 seq.)
>FG091900176
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
1590152
1590063
-
Lys
TTT
[ENA]
¡û
>FG091900177
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
1512581
1512492
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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