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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
83 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV183732916
PJTY01000001
403581
Alphaproteobacteria
TTG
Gln
>WENV183732918
PJTY01000001
337513
Alphaproteobacteria
TGT
Thr
>WENV183732922
PJTY01000001
73523
Alphaproteobacteria
CAG
Leu
>WENV183732926
PJTY01000001
21542
Alphaproteobacteria
GGA
Ser
>WENV183732928
PJTY01000002
284697
Alphaproteobacteria
GAA
Phe
>WENV183732931
PJTY01000002
399340
Alphaproteobacteria
GTT
Asn
>WENV183732941
PJTY01000004
229944
Alphaproteobacteria
CGG
Pro
>WENV183732944
PJTY01000004
431636
Alphaproteobacteria
CTC
Glu
>WENV183732955
PJTY01000007
100353
Alphaproteobacteria
GTA
Tyr
>WENV183732959
PJTY01000008
231487
Alphaproteobacteria
TCT
Arg
>WENV183732964
PJTY01000009
178050
Alphaproteobacteria
GTG
His
>WENV183732968
PJTY01000009
101069
Alphaproteobacteria
TAA
Leu
>WENV183732972
PJTY01000010
13331
Alphaproteobacteria
GCT
Ser
>WENV183732981
PJTY01000012
480900
Alphaproteobacteria
GCA
Cys
>WENV183732983
PJTY01000012
77010
Alphaproteobacteria
GAG
Leu
>WENV183732984
PJTY01000012
281409
Alphaproteobacteria
TTT
Lys
>WENV183733004
PJTY01000017
201940
Alphaproteobacteria
CAT
Met
>WENV183733009
PJTY01000017
282977
Alphaproteobacteria
CAT
Met
>WENV183733010
PJTY01000017
199536
Alphaproteobacteria
TGG
Pro
>WENV183733011
PJTY01000018
424450
Alphaproteobacteria
GGT
Thr
>WENV183733013
PJTY01000018
228484
Alphaproteobacteria
CCG
Arg
>WENV183733026
PJTY01000021
30668
Alphaproteobacteria
CGA
Ser
>WENV183733027
PJTY01000021
284697
Alphaproteobacteria
GAA
Phe
>WENV183733028
PJTY01000022
403836
Alphaproteobacteria
>WENV183733031
PJTY01000024
199536
Alphaproteobacteria
TGG
Pro
>WENV183733034
PJTY01000026
73167
Alphaproteobacteria
GAG
Leu
>WENV183733041
PJTY01000028
178576
Alphaproteobacteria
ACG
Arg
>WENV183733042
PJTY01000028
178576
Alphaproteobacteria
ACG
Arg
>WENV183733043
PJTY01000028
399340
Alphaproteobacteria
GTT
Asn
>WENV183733053
PJTY01000031
225944
Alphaproteobacteria
CCT
Arg
>WENV183733090
PJTY01000057
179894
Alphaproteobacteria
CCG
Arg
>WENV183733102
PJTY01000066
399340
Alphaproteobacteria
GTT
Asn
>WENV183733122
PJTY01000087
282977
Alphaproteobacteria
CAT
Met
>WENV183733131
PJTY01000103
228484
Alphaproteobacteria
CCG
Arg
>WENV183733132
PJTY01000104
283321
Alphaproteobacteria
CGT
Thr
>WENV183733153
PJTY01000132
284698
Alphaproteobacteria
TTT
Lys
>WENV183733165
PJTY01000166
404592
Alphaproteobacteria
GGT
Thr
>WENV183733171
PJTY01000207
399340
Alphaproteobacteria
GTT
Asn
>WENV183733204
PJTY01000259
29655
Alphaproteobacteria
TGA
Ser
>WENV183733205
PJTY01000263
399340
Alphaproteobacteria
GTT
Asn
>WENV183733206
PJTY01000263
399340
Alphaproteobacteria
GTT
Asn
>WENV183733227
PJTY01000382
427571
Alphaproteobacteria
GCC
Gly
>WENV183733246
PJTY01000438
400186
Alphaproteobacteria
GTT
Asn
>WENV183733251
PJTY01000502
490723
Alphaproteobacteria
CTG
Gln
>WENV183733257
PJTY01000519
178198
Alphaproteobacteria
TTT
Lys
>WENV183733266
PJTY01000558
78800
Alphaproteobacteria
CAG
Leu
>WENV183733309
PJTY01000834
403836
Alphaproteobacteria
>WENV183733310
PJTY01000844
209657
Alphaproteobacteria
TAC
Val
>WENV183733319
PJTY01001013
301758
Alphaproteobacteria
GAA
Phe
>WENV183733353
PJTY01001304
284697
Alphaproteobacteria
GAA
Phe
>WENV183733363
PJTY01001343
400190
Alphaproteobacteria
>WENV183733406
PJTY01001691
482902
Alphaproteobacteria
TCC
Gly
>WENV183733424
PJTY01001929
400188
Alphaproteobacteria
CCC
Gly
>WENV183733442
PJTY01002117
404744
Alphaproteobacteria
GCC
Gly
>WENV183733446
PJTY01002177
282924
Alphaproteobacteria
CGC
Ala
>WENV183733453
PJTY01002235
178197
Alphaproteobacteria
CAT
Met
>WENV183733480
PJTY01002655
480946
Alphaproteobacteria
TTG
Gln
>WENV183733487
PJTY01002731
13311
Alphaproteobacteria
GCT
Ser
>WENV183733505
PJTY01003043
324019
Alphaproteobacteria
TGC
Ala
>WENV183733531
PJTY01003747
178576
Alphaproteobacteria
ACG
Arg
>WENV183733532
PJTY01003747
178576
Alphaproteobacteria
ACG
Arg
>WENV183733535
PJTY01003816
29645
Alphaproteobacteria
CGA
Ser
>WENV183733536
PJTY01003926
118136
Alphaproteobacteria
CAA
Leu
>WENV183733537
PJTY01003944
480392
Alphaproteobacteria
GCA
Cys
>WENV183733577
PJTY01005127
400190
Alphaproteobacteria
>WENV183733587
PJTY01005428
300471
Alphaproteobacteria
TGC
Ala
>WENV183733603
PJTY01006251
34617
Alphaproteobacteria
GGA
Ser
>WENV183733614
PJTY01006705
308123
Alphaproteobacteria
CCA
Trp
>WENV183733615
PJTY01006776
140932
Alphaproteobacteria
>WENV183733618
PJTY01007291
282658
Alphaproteobacteria
CGT
Thr
>WENV183733621
PJTY01007508
29598
Alphaproteobacteria
GGA
Ser
>WENV183733622
PJTY01007692
156060
Alphaproteobacteria
GGG
Pro
>WENV183733624
PJTY01007760
398994
Alphaproteobacteria
GTT
Asn
>WENV183733639
PJTY01008289
280788
Alphaproteobacteria
TTT
Lys
>WENV183733655
PJTY01009416
29417
Alphaproteobacteria
CGA
Ser
>WENV183733686
PJTY01011504
176225
Alphaproteobacteria
TGG
Pro
>WENV183733708
PJTY01013692
282923
Alphaproteobacteria
CTT
Lys
>WENV183733725
PJTY01016530
428327
Alphaproteobacteria
GCC
Gly
>WENV183733726
PJTY01016599
401056
Alphaproteobacteria
TTC
Glu
>WENV183733741
PJTY01019734
284277
Alphaproteobacteria
CGC
Ala
>WENV183733752
PJTY01022205
413432
Alphaproteobacteria
GGT
Thr
>WENV183733800
PJTY01028591
400190
Alphaproteobacteria
>WENV183733855
PJTY01037809
29470
Alphaproteobacteria
TGA
Ser
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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