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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
18 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170271422
CERJ01014515
275828
Alphaproteobacteria
GTC
Asp
>WENV170271433
CERJ01015263
780326
Alphaproteobacteria
CCC
Gly
>WENV170271610
CERJ01066062
455289
Alphaproteobacteria
TTT
Lys
>WENV170271554
CERJ01039640
460881
Alphaproteobacteria
CCA
Trp
>WENV170271337
CERJ01002439
30553
Alphaproteobacteria
GGA
Ser
>WENV170271622
CERJ01068741
454180
Alphaproteobacteria
CGT
Thr
>WENV170271528
CERJ01025748
19999
Alphaproteobacteria
GCT
Ser
>WENV170271640
CERJ01072324
655363
Alphaproteobacteria
GGT
Thr
>WENV170271650
CERJ01073797
274144
Alphaproteobacteria
GTG
His
>WENV170271429
CERJ01014705
655394
Alphaproteobacteria
GTT
Asn
>WENV170271547
CERJ01035496
273450
Alphaproteobacteria
TCT
Arg
>WENV170271414
CERJ01013357
274138
Alphaproteobacteria
CAT
Met
>WENV170271342
CERJ01003068
46072
Alphaproteobacteria
GCT
Ser
>WENV170271329
CERJ01001211
655166
Alphaproteobacteria
CAC
Val
>WENV170271360
CERJ01004682
454512
Alphaproteobacteria
CCA
Trp
>WENV170271402
CERJ01011877
274133
Alphaproteobacteria
ACG
Arg
>WENV170271377
CERJ01005719
274130
Alphaproteobacteria
CGG
Pro
>WENV170271651
CERJ01074037
180561
Alphaproteobacteria
TAG
Leu
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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