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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
191 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1006474
SRR020488.101410
20153
Cyanobacteriota
GCT
Ser
>SRA1006475
SRR020488.101543
20153
Cyanobacteriota
GCT
Ser
>SRA1006480
SRR020488.102910
277353
Cyanobacteriota
ACG
Arg
>SRA1006244
SRR020488.10975
654134
Cyanobacteriota
GTT
Asn
>SRA1006498
SRR020488.109826
271967
Cyanobacteriota
GTC
Asp
>SRA1006499
SRR020488.110198
277353
Cyanobacteriota
ACG
Arg
>SRA1006502
SRR020488.110681
181165
Cyanobacteriota
TAG
Leu
>SRA1006506
SRR020488.112836
20153
Cyanobacteriota
GCT
Ser
>SRA1006509
SRR020488.113508
455176
Cyanobacteriota
GTG
His
>SRA1006521
SRR020488.120628
455176
Cyanobacteriota
GTG
His
>SRA1006247
SRR020488.12307
454022
Cyanobacteriota
TGC
Ala
>SRA1006533
SRR020488.124482
271967
Cyanobacteriota
GTC
Asp
>SRA1006534
SRR020488.124782
181218
Cyanobacteriota
GTA
Tyr
>SRA1006542
SRR020488.128064
654134
Cyanobacteriota
GTT
Asn
>SRA1006543
SRR020488.128072
277353
Cyanobacteriota
ACG
Arg
>SRA1006545
SRR020488.128241
20153
Cyanobacteriota
GCT
Ser
>SRA1006559
SRR020488.132670
455176
Cyanobacteriota
GTG
His
>SRA1006565
SRR020488.134034
454022
Cyanobacteriota
TGC
Ala
>SRA1006569
SRR020488.135205
458795
Cyanobacteriota
GGC
Ala
>SRA1006572
SRR020488.136160
779735
Cyanobacteriota
TCC
Gly
>SRA1006574
SRR020488.136849
46559
Cyanobacteriota
GGA
Ser
>SRA1006581
SRR020488.140972
277353
Cyanobacteriota
ACG
Arg
>SRA1006586
SRR020488.142692
271967
Cyanobacteriota
GTC
Asp
>SRA1006594
SRR020488.146764
73049
Cyanobacteriota
TAA
Leu
>SRA1006614
SRR020488.152754
455176
Cyanobacteriota
GTG
His
>SRA1006615
SRR020488.153055
458794
Cyanobacteriota
CAT
Met
>SRA1006249
SRR020488.15566
20153
Cyanobacteriota
GCT
Ser
>SRA1006627
SRR020488.155970
271967
Cyanobacteriota
GTC
Asp
>SRA1006638
SRR020488.161299
73049
Cyanobacteriota
TAA
Leu
>SRA1006647
SRR020488.165806
20153
Cyanobacteriota
GCT
Ser
>SRA1006651
SRR020488.167697
458795
Cyanobacteriota
GGC
Ala
>SRA1006654
SRR020488.168940
455176
Cyanobacteriota
GTG
His
>SRA1006680
SRR020488.174553
181165
Cyanobacteriota
TAG
Leu
>SRA1006682
SRR020488.175700
181217
Cyanobacteriota
CAA
Leu
>SRA1006683
SRR020488.175988
181165
Cyanobacteriota
TAG
Leu
>SRA1006690
SRR020488.178585
455176
Cyanobacteriota
GTG
His
>SRA1006705
SRR020488.183062
455176
Cyanobacteriota
GTG
His
>SRA1006709
SRR020488.185053
779735
Cyanobacteriota
TCC
Gly
>SRA1006710
SRR020488.185129
181218
Cyanobacteriota
GTA
Tyr
>SRA1006711
SRR020488.185129
657291
Cyanobacteriota
GGT
Thr
>SRA1006712
SRR020488.185544
779735
Cyanobacteriota
TCC
Gly
>SRA1006722
SRR020488.188210
657285
Cyanobacteriota
TTG
Gln
>SRA1006729
SRR020488.189468
271967
Cyanobacteriota
GTC
Asp
>SRA1006743
SRR020488.193260
46559
Cyanobacteriota
GGA
Ser
>SRA1006744
SRR020488.193348
657285
Cyanobacteriota
TTG
Gln
>SRA1006772
SRR020488.202921
272148
Cyanobacteriota
CAT
Met
>SRA1006775
SRR020488.204707
654134
Cyanobacteriota
GTT
Asn
>SRA1006778
SRR020488.205653
181165
Cyanobacteriota
TAG
Leu
>SRA1006785
SRR020488.208005
272148
Cyanobacteriota
CAT
Met
>SRA1006789
SRR020488.209879
454022
Cyanobacteriota
TGC
Ala
>SRA1006792
SRR020488.210476
454022
Cyanobacteriota
TGC
Ala
>SRA1006263
SRR020488.21679
20153
Cyanobacteriota
GCT
Ser
>SRA1006813
SRR020488.217634
20153
Cyanobacteriota
GCT
Ser
>SRA1006817
SRR020488.219342
46524
Cyanobacteriota
TGA
Ser
>SRA1006819
SRR020488.219617
181165
Cyanobacteriota
TAG
Leu
>SRA1006820
SRR020488.219845
779735
Cyanobacteriota
TCC
Gly
>SRA1006829
SRR020488.222320
654134
Cyanobacteriota
GTT
Asn
>SRA1006843
SRR020488.227205
181218
Cyanobacteriota
GTA
Tyr
>SRA1006844
SRR020488.228231
181217
Cyanobacteriota
CAA
Leu
>SRA1006854
SRR020488.236567
654134
Cyanobacteriota
GTT
Asn
>SRA1006856
SRR020488.237410
779735
Cyanobacteriota
TCC
Gly
>SRA1006859
SRR020488.237961
181218
Cyanobacteriota
GTA
Tyr
>SRA1006861
SRR020488.238755
181165
Cyanobacteriota
TAG
Leu
>SRA1006862
SRR020488.238976
272148
Cyanobacteriota
CAT
Met
>SRA1006866
SRR020488.240959
181217
Cyanobacteriota
CAA
Leu
>SRA1006874
SRR020488.244688
20153
Cyanobacteriota
GCT
Ser
>SRA1006274
SRR020488.24564
272148
Cyanobacteriota
CAT
Met
>SRA1006877
SRR020488.245827
654134
Cyanobacteriota
GTT
Asn
>SRA1006881
SRR020488.247848
657285
Cyanobacteriota
TTG
Gln
>SRA1006891
SRR020488.254742
779735
Cyanobacteriota
TCC
Gly
>SRA1006892
SRR020488.255120
654134
Cyanobacteriota
GTT
Asn
>SRA1006894
SRR020488.255779
20153
Cyanobacteriota
GCT
Ser
>SRA1006902
SRR020488.257296
271967
Cyanobacteriota
GTC
Asp
>SRA1006919
SRR020488.263999
657285
Cyanobacteriota
TTG
Gln
>SRA1006935
SRR020488.271081
181218
Cyanobacteriota
GTA
Tyr
>SRA1006940
SRR020488.272561
277353
Cyanobacteriota
ACG
Arg
>SRA1006947
SRR020488.276806
181218
Cyanobacteriota
GTA
Tyr
>SRA1006951
SRR020488.277980
657285
Cyanobacteriota
TTG
Gln
>SRA1006279
SRR020488.28125
46559
Cyanobacteriota
GGA
Ser
>SRA1006967
SRR020488.281854
657285
Cyanobacteriota
TTG
Gln
>SRA1006280
SRR020488.28233
181217
Cyanobacteriota
CAA
Leu
>SRA1006970
SRR020488.282737
458795
Cyanobacteriota
GGC
Ala
>SRA1006979
SRR020488.285039
458794
Cyanobacteriota
CAT
Met
>SRA1006993
SRR020488.289911
271967
Cyanobacteriota
GTC
Asp
>SRA1006994
SRR020488.290404
779735
Cyanobacteriota
TCC
Gly
>SRA1007002
SRR020488.294864
657285
Cyanobacteriota
TTG
Gln
>SRA1007011
SRR020488.296309
660981
Cyanobacteriota
TTT
Lys
>SRA1007022
SRR020488.302135
654134
Cyanobacteriota
GTT
Asn
>SRA1007023
SRR020488.302254
277353
Cyanobacteriota
ACG
Arg
>SRA1007024
SRR020488.302560
277354
Cyanobacteriota
GGG
Pro
>SRA1007029
SRR020488.303434
454022
Cyanobacteriota
TGC
Ala
>SRA1007035
SRR020488.305921
181217
Cyanobacteriota
CAA
Leu
>SRA1007038
SRR020488.307905
181218
Cyanobacteriota
GTA
Tyr
>SRA1007039
SRR020488.307905
657291
Cyanobacteriota
GGT
Thr
>SRA1007053
SRR020488.310451
277353
Cyanobacteriota
ACG
Arg
>SRA1007073
SRR020488.322353
46524
Cyanobacteriota
TGA
Ser
>SRA1007074
SRR020488.322605
277354
Cyanobacteriota
GGG
Pro
>SRA1007075
SRR020488.324117
654134
Cyanobacteriota
GTT
Asn
>SRA1007076
SRR020488.324889
20153
Cyanobacteriota
GCT
Ser
>SRA1006290
SRR020488.32721
271967
Cyanobacteriota
GTC
Asp
>SRA1007106
SRR020488.336279
779735
Cyanobacteriota
TCC
Gly
>SRA1006294
SRR020488.33952
455176
Cyanobacteriota
GTG
His
>SRA1007121
SRR020488.341933
46524
Cyanobacteriota
TGA
Ser
>SRA1007122
SRR020488.342618
458795
Cyanobacteriota
GGC
Ala
>SRA1006296
SRR020488.34472
779735
Cyanobacteriota
TCC
Gly
>SRA1007129
SRR020488.345830
779735
Cyanobacteriota
TCC
Gly
>SRA1007130
SRR020488.345951
657291
Cyanobacteriota
GGT
Thr
>SRA1007139
SRR020488.349424
181218
Cyanobacteriota
GTA
Tyr
>SRA1007140
SRR020488.349436
277353
Cyanobacteriota
ACG
Arg
>SRA1007145
SRR020488.352406
779735
Cyanobacteriota
TCC
Gly
>SRA1007146
SRR020488.353097
181217
Cyanobacteriota
CAA
Leu
>SRA1007153
SRR020488.356548
272148
Cyanobacteriota
CAT
Met
>SRA1006302
SRR020488.35818
272148
Cyanobacteriota
CAT
Met
>SRA1007165
SRR020488.361521
272148
Cyanobacteriota
CAT
Met
>SRA1007167
SRR020488.361662
455176
Cyanobacteriota
GTG
His
>SRA1007168
SRR020488.361870
277353
Cyanobacteriota
ACG
Arg
>SRA1007178
SRR020488.363432
454022
Cyanobacteriota
TGC
Ala
>SRA1007184
SRR020488.366586
270846
Cyanobacteriota
CAT
Met
>SRA1007192
SRR020488.371168
20153
Cyanobacteriota
GCT
Ser
>SRA1007197
SRR020488.372684
277353
Cyanobacteriota
ACG
Arg
>SRA1007205
SRR020488.373862
181217
Cyanobacteriota
CAA
Leu
>SRA1007221
SRR020488.379637
657291
Cyanobacteriota
GGT
Thr
>SRA1007232
SRR020488.382743
654134
Cyanobacteriota
GTT
Asn
>SRA1007245
SRR020488.385859
277354
Cyanobacteriota
GGG
Pro
>SRA1006306
SRR020488.38771
272148
Cyanobacteriota
CAT
Met
>SRA1007252
SRR020488.388405
181165
Cyanobacteriota
TAG
Leu
>SRA1007253
SRR020488.389174
657285
Cyanobacteriota
TTG
Gln
>SRA1007262
SRR020488.391611
657285
Cyanobacteriota
TTG
Gln
>SRA1006308
SRR020488.39360
454022
Cyanobacteriota
TGC
Ala
>SRA1007274
SRR020488.395646
277354
Cyanobacteriota
GGG
Pro
>SRA1006309
SRR020488.39713
20153
Cyanobacteriota
GCT
Ser
>SRA1007287
SRR020488.399020
277354
Cyanobacteriota
GGG
Pro
>SRA1006310
SRR020488.39952
779735
Cyanobacteriota
TCC
Gly
>SRA1007293
SRR020488.401060
271967
Cyanobacteriota
GTC
Asp
>SRA1007300
SRR020488.404001
779735
Cyanobacteriota
TCC
Gly
>SRA1007313
SRR020488.406793
181165
Cyanobacteriota
TAG
Leu
>SRA1007314
SRR020488.406890
454022
Cyanobacteriota
TGC
Ala
>SRA1007320
SRR020488.409621
657285
Cyanobacteriota
TTG
Gln
>SRA1007326
SRR020488.411144
20153
Cyanobacteriota
GCT
Ser
>SRA1007331
SRR020488.412520
181218
Cyanobacteriota
GTA
Tyr
>SRA1007334
SRR020488.414094
277353
Cyanobacteriota
ACG
Arg
>SRA1007338
SRR020488.415492
272148
Cyanobacteriota
CAT
Met
>SRA1007340
SRR020488.416724
181218
Cyanobacteriota
GTA
Tyr
>SRA1007341
SRR020488.416724
657291
Cyanobacteriota
GGT
Thr
>SRA1007366
SRR020488.422719
657291
Cyanobacteriota
GGT
Thr
>SRA1007367
SRR020488.422819
779735
Cyanobacteriota
TCC
Gly
>SRA1007371
SRR020488.424566
657285
Cyanobacteriota
TTG
Gln
>SRA1007381
SRR020488.428312
657291
Cyanobacteriota
GGT
Thr
>SRA1007383
SRR020488.428364
277354
Cyanobacteriota
GGG
Pro
>SRA1007391
SRR020488.431236
455176
Cyanobacteriota
GTG
His
>SRA1007397
SRR020488.434276
271967
Cyanobacteriota
GTC
Asp
>SRA1007398
SRR020488.434653
654134
Cyanobacteriota
GTT
Asn
>SRA1007399
SRR020488.435564
46559
Cyanobacteriota
GGA
Ser
>SRA1007402
SRR020488.436618
181217
Cyanobacteriota
CAA
Leu
>SRA1007403
SRR020488.437052
779735
Cyanobacteriota
TCC
Gly
>SRA1007410
SRR020488.438678
73049
Cyanobacteriota
TAA
Leu
>SRA1007411
SRR020488.438776
181217
Cyanobacteriota
CAA
Leu
>SRA1006317
SRR020488.44215
181217
Cyanobacteriota
CAA
Leu
>SRA1007423
SRR020488.443857
46524
Cyanobacteriota
TGA
Ser
>SRA1007429
SRR020488.447315
181217
Cyanobacteriota
CAA
Leu
>SRA1007434
SRR020488.449034
181165
Cyanobacteriota
TAG
Leu
>SRA1007437
SRR020488.451366
277354
Cyanobacteriota
GGG
Pro
>SRA1007441
SRR020488.452657
73049
Cyanobacteriota
TAA
Leu
>SRA1007442
SRR020488.453947
654134
Cyanobacteriota
GTT
Asn
>SRA1007443
SRR020488.454701
181218
Cyanobacteriota
GTA
Tyr
>SRA1007444
SRR020488.454701
657291
Cyanobacteriota
GGT
Thr
>SRA1007445
SRR020488.454936
657285
Cyanobacteriota
TTG
Gln
>SRA1006322
SRR020488.45851
20153
Cyanobacteriota
GCT
Ser
>SRA1007456
SRR020488.459889
455176
Cyanobacteriota
GTG
His
>SRA1007460
SRR020488.462641
271967
Cyanobacteriota
GTC
Asp
>SRA1006325
SRR020488.47372
270846
Cyanobacteriota
CAT
Met
>SRA1006326
SRR020488.48282
20153
Cyanobacteriota
GCT
Ser
>SRA1006332
SRR020488.50302
654134
Cyanobacteriota
GTT
Asn
>SRA1006336
SRR020488.51953
465391
Cyanobacteriota
CCA
Trp
>SRA1006344
SRR020488.53726
272148
Cyanobacteriota
CAT
Met
>SRA1006345
SRR020488.53836
20153
Cyanobacteriota
GCT
Ser
>SRA1006232
SRR020488.5766
657291
Cyanobacteriota
GGT
Thr
>SRA1006377
SRR020488.67240
779735
Cyanobacteriota
TCC
Gly
>SRA1006382
SRR020488.69118
20153
Cyanobacteriota
GCT
Ser
>SRA1006393
SRR020488.72569
272148
Cyanobacteriota
CAT
Met
>SRA1006402
SRR020488.75524
657291
Cyanobacteriota
GGT
Thr
>SRA1006403
SRR020488.76327
181218
Cyanobacteriota
GTA
Tyr
>SRA1006405
SRR020488.77068
458794
Cyanobacteriota
CAT
Met
>SRA1006413
SRR020488.79492
73049
Cyanobacteriota
TAA
Leu
>SRA1006418
SRR020488.80368
455176
Cyanobacteriota
GTG
His
>SRA1006427
SRR020488.83985
181165
Cyanobacteriota
TAG
Leu
>SRA1006443
SRR020488.89731
20153
Cyanobacteriota
GCT
Ser
>SRA1006445
SRR020488.90859
46524
Cyanobacteriota
TGA
Ser
>SRA1006240
SRR020488.9305
181218
Cyanobacteriota
GTA
Tyr
>SRA1006241
SRR020488.9305
657291
Cyanobacteriota
GGT
Thr
>SRA1006468
SRR020488.98796
272148
Cyanobacteriota
CAT
Met
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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