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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1011289
SRR020492.356018
273852
Gammaproteobacteria
GTC
Asp
>SRA1009191
SRR020491.145984
272023
Gammaproteobacteria
GAT
Ile
>SRA1010719
SRR020492.150812
272023
Gammaproteobacteria
GAT
Ile
>SRA1011394
SRR020492.393166
780764
Gammaproteobacteria
TCC
Gly
>SRA1011471
SRR020492.422870
780764
Gammaproteobacteria
TCC
Gly
>SRA1011290
SRR020492.356018
454968
Gammaproteobacteria
TAC
Val
>SRA1009972
SRR020491.417039
451982
Gammaproteobacteria
GGC
Ala
>SRA1010206
SRR020491.490087
453181
Gammaproteobacteria
GTG
His
>SRA1009596
SRR020491.289619
272104
Gammaproteobacteria
CGG
Pro
>SRA1008838
SRR020491.38749
452412
Gammaproteobacteria
GCC
Gly
>SRA1009704
SRR020491.330807
452412
Gammaproteobacteria
GCC
Gly
>SRA1007747
SRR020490.38422
271600
Gammaproteobacteria
GAT
Ile
>SRA1008007
SRR020490.162617
180152
Gammaproteobacteria
TAG
Leu
>SRA1007625
SRR020489.149005
467367
Gammaproteobacteria
GGT
Thr
>SRA1012210
SRR020493.217142
467367
Gammaproteobacteria
GGT
Thr
>SRA1008442
SRR020490.360831
467367
Gammaproteobacteria
GGT
Thr
>SRA1012993
SRR020494.51952
780241
Gammaproteobacteria
GCA
Cys
>SRA1007538
SRR020489.73129
270982
Gammaproteobacteria
GAT
Ile
>SRA1012480
SRR020493.326235
276973
Gammaproteobacteria
GAC
Val
>SRA1007209
SRR020488.376471
459731
Gammaproteobacteria
GGT
Thr
>SRA1012230
SRR020493.222532
459731
Gammaproteobacteria
GGT
Thr
>SRA1012366
SRR020493.286445
180480
Gammaproteobacteria
GTA
Tyr
>SRA1012832
SRR020493.445673
273749
Gammaproteobacteria
CCA
Trp
>SRA1011671
SRR020493.38394
455405
Gammaproteobacteria
GGT
Thr
>SRA1006541
SRR020488.127701
273754
Gammaproteobacteria
GTT
Asn
>SRA1006904
SRR020488.257654
458352
Gammaproteobacteria
TTG
Gln
>SRA1006375
SRR020488.66604
453897
Gammaproteobacteria
TAC
Val
>SRA1006903
SRR020488.257654
181084
Gammaproteobacteria
TAG
Leu
>SRA1007102
SRR020488.334885
276372
Gammaproteobacteria
ACG
Arg
>SRA1007362
SRR020488.422338
274093
Gammaproteobacteria
GTC
Asp
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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