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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
18 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170061634
CDZI01057003
370534
Verrucomicrobiota
TGT
Thr
>WENV170061044
CDZI01031636
370537
Verrucomicrobiota
CCG
Arg
>WENV170061532
CDZI01053927
290976
Verrucomicrobiota
GGC
Ala
>WENV170061423
CDZI01048448
88984
Verrucomicrobiota
GTA
Tyr
>WENV170061818
CDZI01065235
88983
Verrucomicrobiota
TAA
Leu
>WENV170061708
CDZI01060447
370530
Verrucomicrobiota
TAC
Val
>WENV170061710
CDZI01060447
370526
Verrucomicrobiota
CTG
Gln
>WENV170062002
CDZI01073394
50031
Verrucomicrobiota
TGA
Ser
>WENV170061059
CDZI01032221
8030
Verrucomicrobiota
CGA
Ser
>WENV170060505
CDZI01006342
370525
Verrucomicrobiota
TTG
Gln
>WENV170061957
CDZI01071632
65262
Verrucomicrobiota
CAG
Leu
>WENV170061820
CDZI01065235
8029
Verrucomicrobiota
GCT
Ser
>WENV170061433
CDZI01049028
139132
Verrucomicrobiota
GTC
Asp
>WENV170061709
CDZI01060447
139132
Verrucomicrobiota
GTC
Asp
>WENV170060351
CDZI01000042
370538
Verrucomicrobiota
CGT
Thr
>WENV170060950
CDZI01027026
260061
Verrucomicrobiota
>WENV170061106
CDZI01034469
161141
Verrucomicrobiota
TGG
Pro
>WENV170061819
CDZI01065235
260057
Verrucomicrobiota
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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