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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
17 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170101346
CEAR01030003
370534
Verrucomicrobiota
TGT
Thr
>WENV170101433
CEAR01032619
370537
Verrucomicrobiota
CCG
Arg
>WENV170101772
CEAR01046651
290976
Verrucomicrobiota
GGC
Ala
>WENV170100743
CEAR01002664
88984
Verrucomicrobiota
GTA
Tyr
>WENV170101591
CEAR01038492
88983
Verrucomicrobiota
TAA
Leu
>WENV170100933
CEAR01011991
65261
Verrucomicrobiota
CAG
Leu
>WENV170101974
CEAR01057143
370530
Verrucomicrobiota
TAC
Val
>WENV170100762
CEAR01003169
370526
Verrucomicrobiota
CTG
Gln
>WENV170100697
CEAR01000916
50031
Verrucomicrobiota
TGA
Ser
>WENV170101487
CEAR01034570
8030
Verrucomicrobiota
CGA
Ser
>WENV170101771
CEAR01046651
370525
Verrucomicrobiota
TTG
Gln
>WENV170101593
CEAR01038492
8029
Verrucomicrobiota
GCT
Ser
>WENV170100761
CEAR01003169
139132
Verrucomicrobiota
GTC
Asp
>WENV170101086
CEAR01018600
139132
Verrucomicrobiota
GTC
Asp
>WENV170100679
CEAR01000389
370538
Verrucomicrobiota
CGT
Thr
>WENV170101281
CEAR01027146
161141
Verrucomicrobiota
TGG
Pro
>WENV170101592
CEAR01038492
260057
Verrucomicrobiota
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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