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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
19 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170227014
CEQF01037151
237493
Alphaproteobacteria
CCA
Trp
>WENV170227397
CEQF01080095
10665
Alphaproteobacteria
GCT
Ser
>WENV170227699
CEQF01122482
146683
Alphaproteobacteria
GTG
His
>WENV170226971
CEQF01032949
339724
Alphaproteobacteria
TTG
Gln
>WENV170227465
CEQF01089951
421153
Alphaproteobacteria
>WENV170226662
CEQF01004477
199865
Alphaproteobacteria
CAT
Met
>WENV170226658
CEQF01004344
162801
Alphaproteobacteria
GTG
His
>WENV170227852
CEQF01144096
236134
Alphaproteobacteria
TAC
Val
>WENV170228287
CEQF01262529
339725
Alphaproteobacteria
GAA
Phe
>WENV170226799
CEQF01016354
258175
Alphaproteobacteria
CGC
Ala
>WENV170226921
CEQF01027602
167926
Alphaproteobacteria
CAT
Met
>WENV170227197
CEQF01055353
339305
Alphaproteobacteria
GGT
Thr
>WENV170227662
CEQF01117258
237281
Alphaproteobacteria
CGT
Thr
>WENV170227494
CEQF01093988
432316
Alphaproteobacteria
GCA
Cys
>WENV170227258
CEQF01062368
96322
Alphaproteobacteria
CAA
Leu
>WENV170228312
CEQF01264130
369678
Alphaproteobacteria
GGT
Thr
>WENV170226906
CEQF01026445
29831
Alphaproteobacteria
TGA
Ser
>WENV170228263
CEQF01258886
147289
Alphaproteobacteria
GTC
Asp
>WENV170227693
CEQF01121698
193837
Alphaproteobacteria
CAT
Met
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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