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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
53 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1045629
SRR035093.137275
447375
Actinomycetota
CTG
Gln
>SRA1046319
SRR035093.278528
447375
Actinomycetota
CTG
Gln
>SRA1046828
SRR035093.394459
447375
Actinomycetota
CTG
Gln
>SRA1047148
SRR035093.468827
447375
Actinomycetota
CTG
Gln
>SRA1047247
SRR035093.494448
447375
Actinomycetota
CTG
Gln
>SRA1045903
SRR035093.194065
63417
Actinomycetota
GGA
Ser
>SRA1047063
SRR035093.446309
199975
Actinomycetota
GTC
Asp
>SRA1045688
SRR035093.148588
62694
Actinomycetota
GGA
Ser
>SRA1046224
SRR035093.256813
62694
Actinomycetota
GGA
Ser
>SRA1046568
SRR035093.334951
312259
Actinomycetota
CCG
Arg
>SRA1046169
SRR035093.249644
487641
Actinomycetota
CTG
Gln
>SRA1046811
SRR035093.390485
487641
Actinomycetota
CTG
Gln
>SRA1047067
SRR035093.447213
487641
Actinomycetota
CTG
Gln
>SRA1047511
SRR035093.561732
487641
Actinomycetota
CTG
Gln
>SRA1045447
SRR035093.95727
315284
Actinomycetota
TTC
Glu
>SRA1045932
SRR035093.201602
315284
Actinomycetota
TTC
Glu
>SRA1046204
SRR035093.253153
532972
Actinomycetota
GCA
Cys
>SRA1046819
SRR035093.392789
532972
Actinomycetota
GCA
Cys
>SRA1046834
SRR035093.395679
532972
Actinomycetota
GCA
Cys
>SRA1046731
SRR035093.372392
312171
Actinomycetota
CTT
Lys
>SRA1047347
SRR035093.518109
312171
Actinomycetota
CTT
Lys
>SRA1046466
SRR035093.314483
312281
Actinomycetota
TGC
Ala
>SRA1046744
SRR035093.374791
309379
Actinomycetota
TGC
Ala
>SRA1047180
SRR035093.477010
195727
Actinomycetota
TGG
Pro
>SRA1045966
SRR035093.206788
317645
Actinomycetota
ACG
Arg
>SRA1046308
SRR035093.275523
317645
Actinomycetota
ACG
Arg
>SRA1046490
SRR035093.319164
317645
Actinomycetota
ACG
Arg
>SRA1046661
SRR035093.355002
317645
Actinomycetota
ACG
Arg
>SRA1046818
SRR035093.392789
439082
Actinomycetota
GCC
Gly
>SRA1046975
SRR035093.428870
308871
Actinomycetota
TAC
Val
>SRA1045643
SRR035093.140432
270998
Actinomycetota
TAC
Val
>SRA1045855
SRR035093.181792
270998
Actinomycetota
TAC
Val
>SRA1046604
SRR035093.341423
270998
Actinomycetota
TAC
Val
>SRA1046896
SRR035093.412077
270998
Actinomycetota
TAC
Val
>SRA1047161
SRR035093.472536
270998
Actinomycetota
TAC
Val
>SRA1047436
SRR035093.539755
270998
Actinomycetota
TAC
Val
>SRA1046915
SRR035093.418173
310864
Actinomycetota
CGC
Ala
>SRA1047376
SRR035093.526786
310864
Actinomycetota
CGC
Ala
>SRA1045311
SRR035093.64614
445117
Actinomycetota
GAC
Val
>SRA1045929
SRR035093.201241
445117
Actinomycetota
GAC
Val
>SRA1046271
SRR035093.268095
445117
Actinomycetota
GAC
Val
>SRA1046385
SRR035093.294075
445117
Actinomycetota
GAC
Val
>SRA1046779
SRR035093.382624
445117
Actinomycetota
GAC
Val
>SRA1046914
SRR035093.417924
445117
Actinomycetota
GAC
Val
>SRA1046983
SRR035093.429557
445117
Actinomycetota
GAC
Val
>SRA1047506
SRR035093.560469
445117
Actinomycetota
GAC
Val
>SRA1045601
SRR035093.132384
81194
Actinomycetota
GAG
Leu
>SRA1046116
SRR035093.239356
81194
Actinomycetota
GAG
Leu
>SRA1046219
SRR035093.255698
81194
Actinomycetota
GAG
Leu
>SRA1046794
SRR035093.387516
320612
Actinomycetota
CTT
Lys
>SRA1047319
SRR035093.509546
320612
Actinomycetota
CTT
Lys
>SRA1046333
SRR035093.281450
439915
Actinomycetota
TTG
Gln
>SRA1047626
SRR035093.605011
439915
Actinomycetota
TTG
Gln
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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