This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156821 (70 seq.)
>A171001767
CP002117
Euryarchaeota
Methanolacinia petrolearia DSM 11571 [CP002117]
2677913
2677838
-
Met
CAT
-
¡û
>A171007221
HE964772
Euryarchaeota
Methanoculleus bourgensis MS2 MS2T [HE964772]
105722
105648
-
Met
CAT
-
¡û
>A171007646
LT549891
Euryarchaeota
Methanoculleus bourgensis [LT549891]
159623
159549
-
Met
CAT
-
¡û
>WENV180094603
MTBK01017218
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
212
138
-
fMet
CAT
[ENA]
¢þ
>WENV180095899
MTBK01096710
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
61850
61924
+
fMet
CAT
[ENA]
¢þ
>WENV180096049
MTBK01105393
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
9445
9371
-
fMet
CAT
[ENA]
¢þ
>WENV180096096
MTBK01109179
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
4895
4969
+
fMet
CAT
[ENA]
¢þ
>WENV180315218
OBKH01040014
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
92
17
-
fMet
CAT
[ENA]
¢þ
>WENV181230215
OFEK01000423
[OFEK] activated sludge metagenome; Anaerobic digester
22708
22634
-
fMet
CAT
[ENA]
¢þ
>WENV181230747
OFEK01002873
[OFEK] activated sludge metagenome; Anaerobic digester
1723
1649
-
fMet
CAT
[ENA]
¢þ
>WENV181230805
OFEK01003661
[OFEK] activated sludge metagenome; Anaerobic digester
6965
7039
+
fMet
CAT
[ENA]
¢þ
>WENV181231029
OFEK01008139
[OFEK] activated sludge metagenome; Anaerobic digester
1411
1337
-
fMet
CAT
[ENA]
¢þ
>WENV181312418
OFJB01110632
[OFJB] sludge metagenome; sludge
469
395
-
fMet
CAT
[ENA]
¢þ
>WENV183512233
OMKS01000160
[OMKS] sediment metagenome; hot spring sediment
42336
42262
-
fMet
CAT
[ENA]
¢þ
>WENV183512676
OMKS01001054
[OMKS] sediment metagenome; hot spring sediment
9406
9480
+
fMet
CAT
[ENA]
¢þ
>WENV183513021
OMKS01002369
[OMKS] sediment metagenome; hot spring sediment
15791
15716
-
fMet
CAT
[ENA]
¢þ
>WENV183514625
OMKS01025451
[OMKS] sediment metagenome; hot spring sediment
2427
2502
+
fMet
CAT
[ENA]
¢þ
>WENV183514626
OMKS01025451
[OMKS] sediment metagenome; hot spring sediment
2697
2772
+
fMet
CAT
[ENA]
¢þ
>WENV170562332
CZCB01002232
[CZCB] anaerobic digester metagenome; anaerobic digester
24978
25052
+
Met
CAT
[ENA]
¢þ
>WENV170562437
CZCB01002784
[CZCB] anaerobic digester metagenome; anaerobic digester
4039
3965
-
Met
CAT
[ENA]
¢þ
>WENV170660532
JXWT01131260
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
394
469
+
Met
CAT
[ENA]
¢þ
>WENV170668613
LAHQ01004717
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
1689
1615
-
Met
CAT
[ENA]
¢þ
>WENV170668721
LAHQ01022548
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
299
373
+
Met
CAT
[ENA]
¢þ
>WENV170670273
LAHT01000916
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
646
720
+
Met
CAT
[ENA]
¢þ
>WENV170670732
LAHU01000058
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
6962
7036
+
Met
CAT
[ENA]
¢þ
>WENV170670734
LAHU01000103
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
22480
22403
-
Met
CAT
[ENA]
¢þ
>WENV170674741
LCWY01001401
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
696
770
+
Met
CAT
[ENA]
¢þ
>WENV170674997
LCWZ01000428
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
696
770
+
Met
CAT
[ENA]
¢þ
>WENV170677284
LDZT01004685
[LDZT] terrestrial metagenome; oil reservoir sample SB1
5683
5609
-
Met
CAT
[ENA]
¢þ
>WENV170677564
LDZT01006988
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1296
1222
-
Met
CAT
[ENA]
¢þ
>WENV170678690
LDZU01003814
[LDZU] terrestrial metagenome; oil reservoir sample SB2
2987
2913
-
Met
CAT
[ENA]
¢þ
>WENV170678765
LDZU01004237
[LDZU] terrestrial metagenome; oil reservoir sample SB2
1296
1222
-
Met
CAT
[ENA]
¢þ
>WENV170688891
LFRM01266632
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
41038
41112
+
Met
CAT
[ENA]
¢þ
>WENV170688963
LFRM01270219
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
24978
25052
+
Met
CAT
[ENA]
¢þ
>WENV170715269
LNQE01001161
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
3712
3637
-
Met
CAT
[ENA]
¢þ
>WENV170715343
LNQE01001610
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
4010
4085
+
Met
CAT
[ENA]
¢þ
>WENV170717402
LSQX01034387
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
30614
30688
+
Met
CAT
[ENA]
¢þ
>WENV170717517
LSQX01038477
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1720
1646
-
Met
CAT
[ENA]
¢þ
>WENV170717644
LSQX01044280
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
14940
15014
+
Met
CAT
[ENA]
¢þ
>WENV170718558
LSQX01081481
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4117
4191
+
Met
CAT
[ENA]
¢þ
>WENV170719143
LSQX01103607
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1174
1100
-
Met
CAT
[ENA]
¢þ
>WENV170721020
LSQX01176001
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1119
1045
-
Met
CAT
[ENA]
¢þ
>WENV170721507
LSQX01193368
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1722
1648
-
Met
CAT
[ENA]
¢þ
>WENV170725793
LSQX01356589
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
16260
16186
-
Met
CAT
[ENA]
¢þ
>At1223
CP000559
Euryarchaeota
Methanocorpusculum labreanum Z [CP000559]
742054
741980
-
Met
CAT
[Ensembl]
¡û
>At1244
CP000562
Euryarchaeota
Methanoculleus marisnigri JR1 [CP000562]
207524
207598
+
Met
CAT
[Ensembl]
¡û
>WENV170969024
MTKW01019041
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1063
1137
+
Met
CAT
[ENA]
¢þ
>W1910211668
FMID01000014
Euryarchaeota
Methanoculleus chikugoensis [FMID]
29772
29698
-
Met
CAT
[ENA]
¡û
>W1910226971
FNFT01000005
Euryarchaeota
Methanoculleus thermophilus DSM 2373 [FNFT]
204775
204701
-
Met
CAT
[ENA]
¡û
>W1910572536
JMIO01000081
Euryarchaeota
Methanoculleus sp. MH98A [JMIO]
8853
8927
+
Met
CAT
[ENA]
¡û
>W1910583793
JXOJ01000001
Euryarchaeota
Methanoculleus sediminis S3Fa [JXOJ]
32319
32393
+
Met
CAT
[ENA]
¡û
>W1910617160
LHQS01000001
Euryarchaeota
Methanoculleus taiwanensis CYW4 [LHQS]
353405
353331
-
Met
CAT
[ENA]
¡û
>W1910635198
LMVO01000007
Euryarchaeota
Methanocorpusculum parvum XII [LMVO]
31970
32044
+
Met
CAT
[ENA]
¡û
>W1910783518
MPOY01000065
Euryarchaeota
Methanoculleus sp. EBM-46 [MPOY]
141
67
-
Met
CAT
[ENA]
¡û
>W1911581309
PGCL01000001
Euryarchaeota
Methanofollis fontis FWC-SCC2 [PGCL]
177545
177620
+
Met
CAT
[ENA]
¡û
>W1610000246
AASI01000001
Euryarchaeota
Methanoculleus marisnigri JR1 [AASI]
1066052
1066126
+
Met
CAT
[ENA]
¡û
>W1610003497
AGCO01000007
Euryarchaeota
Methanofollis liminatans DSM 4140 [AGCO]
858883
858960
+
Met
CAT
[ENA]
¡û
>W1610003498
AGCO01000007
Euryarchaeota
Methanofollis liminatans DSM 4140 [AGCO]
859154
859229
+
Met
CAT
[ENA]
¡û
>W1610024410
AUMX01000002
Euryarchaeota
Methanocorpusculum bavaricum DSM 4179 [AUMX]
15123
15049
-
Met
CAT
[ENA]
¡û
>W1610029768
AXDV01000020
Euryarchaeota
Methanolacinia paynteri DSM 2545 [AXDV]
76831
76754
-
Met
CAT
[ENA]
¡û
>W1610063035
BCNX01000008
Euryarchaeota
Methanoculleus thermophilus CR-1 [BCNX]
204664
204590
-
Met
CAT
[ENA]
¡û
>W1610063079
BCNY01000015
Euryarchaeota
Methanoculleus horonobensis T10 [BCNY]
539987
540061
+
Met
CAT
[ENA]
¡û
>W1610605029
LFRN01000190
Euryarchaeota
Candidatus Methanoculleus thermohydrogenotrophicum DTU006 [LFRN]
24978
25052
+
Met
CAT
[ENA]
¡û
>W1610605066
LFRO01000068
Euryarchaeota
Methanoculleus sp. DTU007 [LFRO]
41038
41112
+
Met
CAT
[ENA]
¡û
>W1610613806
LGGJ01000026
Euryarchaeota
Methanocalculus sp. 52_23 [LGGJ]
1296
1222
-
Met
CAT
[ENA]
¡û
>W1610614427
LGHE01000222
Euryarchaeota
Methanoculleus marisnigri [LGHE]
2987
2913
-
Met
CAT
[ENA]
¡û
>W1610614471
LGHF01000035
Euryarchaeota
Methanomicrobiales archaeon 53_19 [LGHF]
1296
1222
-
Met
CAT
[ENA]
¡û
>W1610685944
LKUD01000028
Euryarchaeota
Methanoculleus sp. SDB [LKUD]
35781
35707
-
Met
CAT
[ENA]
¡û
>W1610686032
LKUF01000277
Euryarchaeota
Methanolinea sp. SDB [LKUF]
2741
2664
-
Met
CAT
[ENA]
¡û
>W1610946089
LUYK01000262
Euryarchaeota
Methanomicrobiales archaeon Methan_07 [LUYK]
6863
6937
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK