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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177345 (20 seq.)
>A171001430
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
362908
362983
+
Lys
CTT
-
¡û
>A171001722
CP002101
Euryarchaeota
Methanosalsum zhilinae DSM 4017 [CP002101]
2119802
2119877
+
Lys
CTT
-
¡û
>A171005351
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
361579
361653
+
Lys
CTT
-
¡û
>A171005352
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
363250
363324
+
Lys
CTT
-
¡û
>A171006822
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
358246
358171
-
Lys
CTT
-
¡û
>At0975
CP000300
Euryarchaeota
Methanococcoides burtonii DSM 6242 [CP000300]
2257451
2257524
+
Lys
CTT
[Ensembl]
¡û
>W1910228307
FNMU01000001
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
172466
172391
-
Lys
CTT
[ENA]
¡û
>W1910229843
FOHQ01000002
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
282989
283063
+
Lys
CTT
[ENA]
¡û
>W1910471797
FXBN01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
700275
700200
-
Lys
CTT
[ENA]
¡û
>W1910575261
JRHO01000009
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
363634
363708
+
Lys
CTT
[ENA]
¡û
>W1910575262
JRHO01000009
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
363990
364064
+
Lys
CTT
[ENA]
¡û
>W1910582966
JWTK01000002
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
309693
309768
+
Lys
CTT
[ENA]
¡û
>W1910672539
MCNQ01000004
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
161196
161121
-
Lys
CTT
[ENA]
¡û
>W1911492128
OBDR01000003
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
150984
150909
-
Lys
CTT
[ENA]
¡û
>W1911633752
PVBU01000003
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
61462
61537
+
Lys
CTT
[ENA]
¡û
>W1911653218
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
761516
761441
-
Lys
CTT
[ENA]
¡û
>SRA1025819
SRR035085.88774
454 Sequencing (SRP001806)
168
244
+
Lys
CTT
[SRA]
>W1610000131
AADH02000006
Euryarchaeota
Methanococcoides burtonii DSM 6242 [AADH]
137463
137389
-
Lys
CTT
[ENA]
¡û
>W1610919883
LSRU01000122
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
368
444
+
Lys
CTT
[ENA]
¡û
>W1611052491
MAFX01000008
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
36968
37044
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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