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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.313596 (71 seq.)
>W1711078528
LSMZ01000006
Bacillota
Clostridium sp. link-BC1 [LSMZ]
129462
129537
+
Val
TAC
[ENA]
¡û
>W1711078561
LSMZ01000071
Bacillota
Clostridium sp. link-BC1 [LSMZ]
20337
20262
-
Val
TAC
[ENA]
¡û
>W1711078569
LSMZ01000076
Bacillota
Clostridium sp. link-BC1 [LSMZ]
31509
31434
-
Val
TAC
[ENA]
¡û
>W1711222533
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
3577358
3577433
+
Val
TAC
[ENA]
¡û
>W1711222546
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
2982324
2982249
-
Val
TAC
[ENA]
¡û
>W1711222551
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
2482481
2482406
-
Val
TAC
[ENA]
¡û
>C007130
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
3163689
3163764
+
Val
TAC
[Ensembl]
¡û
>C007144
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
2596592
2596517
-
Val
TAC
[Ensembl]
¡û
>C007148
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
2198413
2198338
-
Val
TAC
[Ensembl]
¡û
>WENV180626583
OCQM01026168
[OCQM] human gut metagenome; human gut
496
421
-
Val
TAC
[ENA]
¢þ
>WENV180628748
OCQO01362192
[OCQO] human gut metagenome; human gut
155
80
-
Val
TAC
[ENA]
¢þ
>WENV180628999
OCQP01015787
[OCQP] human gut metagenome; human gut
1531
1456
-
Val
TAC
[ENA]
¢þ
>WENV180630036
OCQP01400858
[OCQP] human gut metagenome; human gut
78
3
-
Val
TAC
[ENA]
¢þ
>W141067352
ASAA01000007
Bacillota
Acetivibrio clariflavus 4-2a [ASAA]
1053134
1053209
+
Val
TAC
[ENA]
¡û
>W141067354
ASAA01000007
Bacillota
Acetivibrio clariflavus 4-2a [ASAA]
1205719
1205794
+
Val
TAC
[ENA]
¡û
>W141067362
ASAA01000007
Bacillota
Acetivibrio clariflavus 4-2a [ASAA]
615262
615187
-
Val
TAC
[ENA]
¡û
>WENV181738407
OGQI01004678
[OGQI] human gut metagenome; faeces
4823
4898
+
Val
TAC
[ENA]
¢þ
>WENV181787082
OGRN01013022
[OGRN] human gut metagenome; faeces
1289
1214
-
Val
TAC
[ENA]
¢þ
>WENV181795563
OGRT01000367
[OGRT] human gut metagenome; faeces
26998
27073
+
Val
TAC
[ENA]
¢þ
>WENV181914424
OGYF01000242
[OGYF] human gut metagenome; faeces
4975
4900
-
Val
TAC
[ENA]
¢þ
>WENV181923744
OGYL01001664
[OGYL] human gut metagenome; faeces
9803
9878
+
Val
TAC
[ENA]
¢þ
>W08011387
ABVG01000010
Bacillota
Acetivibrio thermocellus DSM 4150 [ABVG]
1015
943
-
Val
TAC
[ENA]
¡û
>W141204918
AZKM01000001
Bacillota
[Eubacterium] nodatum ATCC 33099 [AZKM]
2024
2099
+
Val
TAC
[ENA]
¡û
>W141204937
AZKM01000028
Bacillota
[Eubacterium] nodatum ATCC 33099 [AZKM]
37517
37442
-
Val
TAC
[ENA]
¡û
>W141251491
CBQO010000096
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
46276
46201
-
Val
TAC
[ENA]
¡û
>WENV182610449
OJJV01101387
[OJJV] metagenome; faeces
31
106
+
Val
TAC
[ENA]
¢þ
>WENV182635729
OJKY01117519
[OJKY] metagenome; faeces
36
111
+
Val
TAC
[ENA]
¢þ
>WENV182747993
OJQW01000132
[OJQW] human gut metagenome; stool sample
10545
10620
+
Val
TAC
[ENA]
¢þ
>WENV182753354
OJRC01006373
[OJRC] human gut metagenome; stool sample
1481
1406
-
Val
TAC
[ENA]
¢þ
>WENV183094682
OLND01000082
[OLND] human gut metagenome; faeces
50283
50208
-
Val
TAC
[ENA]
¢þ
>WENV183112031
OLNP01000037
[OLNP] human gut metagenome; faeces
50868
50943
+
Val
TAC
[ENA]
¢þ
>WENV183229844
OLQT01000001
[OLQT] human gut metagenome; faeces
285570
285495
-
Val
TAC
[ENA]
¢þ
>WENV183232408
OLQU01009886
[OLQU] human gut metagenome; faeces
1902
1977
+
Val
TAC
[ENA]
¢þ
>WENV183243800
OLRD01001089
[OLRD] human gut metagenome; faeces
9419
9344
-
Val
TAC
[ENA]
¢þ
>WENV183247459
OLRF01003935
[OLRF] human gut metagenome; faeces
760
685
-
Val
TAC
[ENA]
¢þ
>WENV183272971
OLRX01001213
[OLRX] human gut metagenome; faeces
701
626
-
Val
TAC
[ENA]
¢þ
>WENV183655158
OQWD01007271
[OQWD] human gut metagenome; human gut
1922
1997
+
Val
TAC
[ENA]
¢þ
>ENV08002447
ABPU01006479
microbial mat metagenome; Guerrero Negro Hypersaline Mat 06; altitude 310m AMSL; sample depth 1m below water level, 5-6mm depth into the mat
452
527
+
Val
TAC
[ENA]
¡û
>WENV170070328
CDZQ01021918
[CDZQ] gut metagenome; human stools
113846
113771
-
Val
TAC
[ENA]
¢þ
>WENV170684249
LFRM01028761
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
24173
24248
+
Val
TAC
[ENA]
¢þ
>WENV170685287
LFRM01083290
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
22154
22079
-
Val
TAC
[ENA]
¢þ
>WENV170686680
LFRM01158871
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
28066
27991
-
Val
TAC
[ENA]
¢þ
>W09100443
AABG04000006
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
96643
96718
+
Val
TAC
[ENA]
¡û
>W09100470
AABG04000048
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
13157
13082
-
Val
TAC
[ENA]
¡û
>W09100477
AABG04000073
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
10374
10299
-
Val
TAC
[ENA]
¡û
>W09135656
ACVX01000009
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
44243
44318
+
Val
TAC
[ENA]
¡û
>C191138167
CP035281
Bacillota
Aminipila luticellarii JN-18 [CP035281]
1832904
1832829
-
Val
TAC
-
¡û
>C191138173
CP035281
Bacillota
Aminipila luticellarii JN-18 [CP035281]
1760886
1760811
-
Val
TAC
-
¡û
>C191138187
CP035281
Bacillota
Aminipila luticellarii JN-18 [CP035281]
1758983
1758908
-
Val
TAC
-
¡û
>W141816748
JQKC01000021
Bacillota
Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 [JQKC]
128502
128577
+
Val
TAC
[ENA]
¡û
>W141816760
JQKC01000029
Bacillota
Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 [JQKC]
20936
20861
-
Val
TAC
[ENA]
¡û
>W1910373644
FUHN01000004
Bacillota
Mobilibacterium timonense Marseille-P3194 [FUHN]
20810
20885
+
Val
TAC
[ENA]
¡û
>W1910373663
FUHN01000007
Bacillota
Mobilibacterium timonense Marseille-P3194 [FUHN]
357445
357370
-
Val
TAC
[ENA]
¡û
>W1911496618
OCMV01000002
Bacillota
Acetivibrio thermocellus LQRI [OCMV]
676639
676714
+
Val
TAC
[ENA]
¡û
>W1911572308
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
294208
294283
+
Val
TAC
[ENA]
¡û
>W1911572330
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
3330957
3330882
-
Val
TAC
[ENA]
¡û
>W1911572334
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
2965090
2965015
-
Val
TAC
[ENA]
¡û
>C11106460
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
294113
294188
+
Val
TAC
[Ensembl]
¡û
>C11106482
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
3337721
3337646
-
Val
TAC
[Ensembl]
¡û
>C11106486
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
2984888
2984813
-
Val
TAC
[Ensembl]
¡û
>W1511706045
LGTC01000001
Bacillota
Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 [LGTC]
5963331
5963406
+
Val
TAC
[ENA]
¡û
>W1511706076
LGTC01000001
Bacillota
Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 [LGTC]
2895874
2895799
-
Val
TAC
[ENA]
¡û
>C121005029
CP003065
Bacillota
Acetivibrio clariflavus DSM 19732 [CP003065]
412189
412264
+
Val
TAC
[Ensembl]
¡û
>C121005031
CP003065
Bacillota
Acetivibrio clariflavus DSM 19732 [CP003065]
581410
581485
+
Val
TAC
[Ensembl]
¡û
>C121005053
CP003065
Bacillota
Acetivibrio clariflavus DSM 19732 [CP003065]
4757909
4757834
-
Val
TAC
[Ensembl]
¡û
>C161060769
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
294208
294283
+
Val
TAC
-
¡û
>C161060791
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
3330957
3330882
-
Val
TAC
-
¡û
>C161060795
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
2965090
2965015
-
Val
TAC
-
¡û
>C161097543
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
3353404
3353329
-
Val
TAC
-
¡û
>W121061294
AJGS01000038
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
154573
154498
-
Val
TAC
[ENA]
¡û
>W121061383
AJGT01000050
Bacillota
Acetivibrio thermocellus YS [AJGT]
43771
43846
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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