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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.358256 (37 seq.)
>A171000103
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
1278464
1278535
+
Val
TAC
-
¡û
>A171000104
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
1278560
1278632
+
Val
CAC
-
¡û
>A171000885
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
17749
17820
+
Val
TAC
-
¡û
>A171000886
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
17844
17916
+
Val
CAC
-
¡û
>A171002056
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
97453
97382
-
Val
CAC
-
¡û
>A171003983
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
23227
23298
+
Val
CAC
-
¡û
>A171007322
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
2008614
2008685
+
Val
CAC
-
¡û
>A171007353
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
1321995
1322068
+
Val
CAC
-
¡û
>A171007405
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
2470253
2470324
+
Val
CAC
-
¡û
>A171007670
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
2418171
2418245
+
Val
CAC
-
¡û
>A171007715
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1660776
1660847
+
Val
TAC
-
¡û
>A171007716
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1660870
1660942
+
Val
CAC
-
¡û
>WENV180311534
OBJT01360378
[OBJT] soil metagenome; soil
115
43
-
Val
CAC
[ENA]
¢þ
>WENV181173249
OEIV011318340
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
129
55
-
Val
CAC
[ENA]
¢þ
>WENV181229677
OFEK01000020
[OFEK] activated sludge metagenome; Anaerobic digester
142022
142096
+
Val
CAC
[ENA]
¢þ
>WENV181230039
OFEK01000212
[OFEK] activated sludge metagenome; Anaerobic digester
46672
46743
+
Val
CAC
[ENA]
¢þ
>At1666
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
1295989
1296060
+
Val
TAC
[Ensembl]
¡û
>At1667
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
1296085
1296156
+
Val
CAC
[Ensembl]
¡û
>WENV170671463
LAHU01061877
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
99
170
+
Val
CAC
[ENA]
¢þ
>WENV170671715
LAHU01137622
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
3293
3219
-
Val
CAC
[ENA]
¢þ
>WENV170676680
LDZS01001897
[LDZS] terrestrial metagenome; oil reservoir sample K3
78942
78870
-
Val
CAC
[ENA]
¢þ
>WENV170677310
LDZT01004910
[LDZT] terrestrial metagenome; oil reservoir sample SB1
23329
23256
-
Val
CAC
[ENA]
¢þ
>WENV170678579
LDZU01002623
[LDZU] terrestrial metagenome; oil reservoir sample SB2
659
732
+
Val
CAC
[ENA]
¢þ
>WENV170690953
LFRM01372706
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1137
1066
-
Val
TAC
[ENA]
¢þ
>WENV170690954
LFRM01372706
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1043
971
-
Val
CAC
[ENA]
¢þ
>WENV170725756
LSQX01355291
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1791
1719
-
Val
CAC
[ENA]
¢þ
>WENV170975572
MTKZ01001330
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
81014
81085
+
Val
CAC
[ENA]
¢þ
>W1910574926
JQJK01000009
Euryarchaeota
Methanobacterium veterum MK4 [JQJK]
47388
47317
-
Val
TAC
[ENA]
¡û
>W1910574971
JQKN01000015
Euryarchaeota
Methanobacterium arcticum M2 [JQKN]
17528
17599
+
Val
TAC
[ENA]
¡û
>W1910575102
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
2362481
2362552
+
Val
CAC
[ENA]
¡û
>W1910635126
LMVM01000012
Euryarchaeota
Methanobacterium bryantii M.o.H. [LMVM]
81489
81560
+
Val
TAC
[ENA]
¡û
>W1910655437
LZPM01000003
Euryarchaeota
Methanobacterium sp. A39 [LZPM]
81674
81745
+
Val
TAC
[ENA]
¡û
>W1911722806
QREL01000002
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
305280
305209
-
Val
TAC
[ENA]
¡û
>W1911722807
QREL01000002
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
305184
305112
-
Val
CAC
[ENA]
¡û
>W1610006236
AMGN01000028
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
34101
34030
-
Val
CAC
[ENA]
¡û
>W1610011000
AMPO01000001
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
345425
345498
+
Val
CAC
[ENA]
¡û
>W1610613864
LGGL01000017
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
23329
23256
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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