This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.525853 (25 seq.)
>A171000204
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
1499342
1499417
+
Gln
TTG
-
¡û
>A171000512
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
118076
118001
-
Gln
TTG
-
¡û
>A171002188
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
1034613
1034538
-
Gln
TTG
-
¡û
>A171002307
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
1343015
1342940
-
Gln
TTG
-
¡û
>A171002664
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1522013
1522088
+
Gln
TTG
-
¡û
>A171003295
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
545983
545908
-
Gln
TTG
-
¡û
>A171003328
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
1055254
1055179
-
Gln
TTG
-
¡û
>A171003343
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
199186
199261
+
Gln
TTG
-
¡û
>A171004212
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
775406
775481
+
Gln
TTG
-
¡û
>A171004294
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1617405
1617330
-
Gln
TTG
-
¡û
>A171004432
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
398363
398438
+
Gln
TTG
-
¡û
>A171005903
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
278583
278508
-
Gln
TTG
-
¡û
>A171006580
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
1024099
1024174
+
Gln
TTG
-
¡û
>A171007107
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
1621366
1621441
+
Gln
TTG
-
¡û
>A171007532
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
519689
519614
-
Gln
TTG
-
¡û
>At1803
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
1522145
1522220
+
Gln
TTG
[Ensembl]
¡û
>At1827
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
398462
398537
+
Gln
TTG
[Ensembl]
¡û
>At1893
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
432383
432308
-
Gln
TTG
[Ensembl]
¡û
>At1934
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1910169
1910244
+
Gln
TTG
[Ensembl]
¡û
>WENV170676407
LDZR01002513
[LDZR] terrestrial metagenome; oil reservoir sample K2
18860
18935
+
Gln
TTG
[ENA]
¢þ
>W1910229995
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
243353
243278
-
Gln
TTG
[ENA]
¡û
>W1610000871
ABXN01000008
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
25497
25572
+
Gln
TTG
[ENA]
¡û
>W1610005291
AJLF01000002
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
199671
199746
+
Gln
TTG
[ENA]
¡û
>W1610638216
LIXN01000001
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
17997
18072
+
Gln
TTG
[ENA]
¡û
>W1610717931
LLYW01000025
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
81076
81151
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK