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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CCT
HIT:
24 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235073 (4 seq.)
>WENV170623608
FUWD013160274
[FUWD] metagenome; unknown
901
979
+
Arg
CCT
[ENA]
¢þ
>WENV170631885
FUWD013369768
[FUWD] metagenome; unknown
901
979
+
Arg
CCT
[ENA]
¢þ
>SRA1025668
SRR035085.63598
454 Sequencing (SRP001806)
117
39
-
Arg
CCT
[SRA]
>SRA1029536
SRR035087.142967
454 Sequencing (SRP001808)
154
232
+
Arg
CCT
[SRA]
Identical group No.240811 (1 seq.)
>SRA1026108
SRR035085.145371
454 Sequencing (SRP001806)
121
198
+
Arg
CCT
[SRA]
Identical group No.240832 (1 seq.)
>SRA1026598
SRR035085.236888
454 Sequencing (SRP001806)
266
340
+
Arg
CCT
[SRA]
Identical group No.272248 (2 seq.)
>SRA1025504
SRR035085.27075
454 Sequencing (SRP001806)
193
118
-
Arg
CCT
[SRA]
>SRA1025824
SRR035085.89323
454 Sequencing (SRP001806)
193
118
-
Arg
CCT
[SRA]
Identical group No.272308 (1 seq.)
>SRA1025797
SRR035085.85410
454 Sequencing (SRP001806)
111
184
+
Arg
CCT
[SRA]
Identical group No.272310 (1 seq.)
>SRA1025817
SRR035085.88645
454 Sequencing (SRP001806)
361
285
-
Arg
CCT
[SRA]
Identical group No.272331 (1 seq.)
>SRA1025922
SRR035085.110871
454 Sequencing (SRP001806)
415
340
-
Arg
CCT
[SRA]
Identical group No.272349 (3 seq.)
>WENV170607847
FUWD010860866
[FUWD] metagenome; unknown
137
62
-
Arg
CCT
[ENA]
¢þ
>SRA1026050
SRR035085.132311
454 Sequencing (SRP001806)
120
45
-
Arg
CCT
[SRA]
>SRA1026264
SRR035085.175021
454 Sequencing (SRP001806)
120
45
-
Arg
CCT
[SRA]
Identical group No.272388 (8 seq.)
>WENV170616123
FUWD012878456
[FUWD] metagenome; unknown
100
24
-
Arg
CCT
[ENA]
¢þ
>WENV170617305
FUWD012921235
[FUWD] metagenome; unknown
322
398
+
Arg
CCT
[ENA]
¢þ
>WENV170624234
FUWD013178211
[FUWD] metagenome; unknown
708
632
-
Arg
CCT
[ENA]
¢þ
>WENV170632516
FUWD013383794
[FUWD] metagenome; unknown
708
632
-
Arg
CCT
[ENA]
¢þ
>SRA1018995
SRR035082.383558
454 Sequencing (SRP001803)
100
24
-
Arg
CCT
[SRA]
>SRA1019597
SRR035082.484761
454 Sequencing (SRP001803)
462
386
-
Arg
CCT
[SRA]
>SRA1026312
SRR035085.184232
454 Sequencing (SRP001806)
332
408
+
Arg
CCT
[SRA]
>SRA1035576
SRR035089.334157
454 Sequencing (SRP001810)
185
109
-
Arg
CCT
[SRA]
Identical group No.272432 (14 seq.)
>W1710865794
LMGY01000016
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
376965
377041
+
Arg
CCT
[ENA]
¡û
>W131175924
ARJQ01000005
Gammaproteobacteria
Rudaea cellulosilytica DSM 22992 [ARJQ]
809659
809735
+
Arg
CCT
[ENA]
¡û
>W131226648
AUEN01000001
Gammaproteobacteria
Lysobacter sp. URHA0019 [AUEN]
345223
345147
-
Arg
CCT
[ENA]
¡û
>W141215615
AZUH01000016
Gammaproteobacteria
Pseudoxanthomonas suwonensis J42 [AZUH]
28033
28109
+
Arg
CCT
[ENA]
¡û
>W141216682
AZVB01000010
Gammaproteobacteria
Pseudoxanthomonas sp. J35 [AZVB]
67789
67713
-
Arg
CCT
[ENA]
¡û
>WENV170680643
LFEF01006777
[LFEF] freshwater metagenome; waterbloom
900
976
+
Arg
CCT
[ENA]
¢þ
>C181200053
CP031413
Gammaproteobacteria
Lysobacter sp. TY2-98 [CP031413]
1736680
1736756
+
Arg
CCT
-
¡û
>W1810195894
PKSO01000002
Gammaproteobacteria
Pseudoxanthomonas sp. KAs_5_3 [PKSO]
748782
748706
-
Arg
CCT
[ENA]
¡û
>SRA1026542
SRR035085.224933
454 Sequencing (SRP001806)
458
382
-
Arg
CCT
[SRA]
>W1510018845
BBUM02000163
Gammaproteobacteria
Mizugakiibacter sediminis skMP5 [BBUM]
6146
6222
+
Arg
CCT
[ENA]
¡û
>C11118138
CP002446
Gammaproteobacteria
Pseudoxanthomonas suwonensis 11-1 [CP002446]
1366882
1366958
+
Arg
CCT
[Ensembl]
¡û
>W1610728140
LMGY01000016
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
376965
377041
+
Arg
CCT
[ENA]
¡û
>WENV080065
AATO01002954
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
1429
1507
+
Arg
CCT
[ENA]
>W1710579386
FPCI01000001
Gammaproteobacteria
Pseudoxanthomonas sp. YR558 [FPCI]
721950
722026
+
Arg
CCT
[ENA]
¡û
Identical group No.453262 (1 seq.)
>SRA1025693
SRR035085.67726
454 Sequencing (SRP001806)
288
215
-
Arg
CCT
[SRA]
Identical group No.453400 (4 seq.)
>WENV170618167
FUWD012955648
[FUWD] metagenome; unknown
78
151
+
Arg
CCT
[ENA]
¢þ
>SRA1026488
SRR035085.215408
454 Sequencing (SRP001806)
83
156
+
Arg
CCT
[SRA]
>SRA1030067
SRR035087.223626
454 Sequencing (SRP001808)
301
228
-
Arg
CCT
[SRA]
>SRA1030899
SRR035087.344030
454 Sequencing (SRP001808)
248
175
-
Arg
CCT
[SRA]
Identical group No.453406 (1 seq.)
>SRA1026536
SRR035085.223189
454 Sequencing (SRP001806)
470
543
+
Arg
CCT
[SRA]
Identical group No.453425 (1 seq.)
>SRA1026642
SRR035085.247460
454 Sequencing (SRP001806)
92
167
+
Arg
CCT
[SRA]
Identical group No.453433 (1 seq.)
>SRA1026689
SRR035085.261609
454 Sequencing (SRP001806)
247
322
+
Arg
CCT
[SRA]
Identical group No.453455 (1 seq.)
>SRA1026830
SRR035085.305476
454 Sequencing (SRP001806)
196
271
+
Arg
CCT
[SRA]
Identical group No.654241 (1 seq.)
>SRA1025536
SRR035085.35191
454 Sequencing (SRP001806)
233
307
+
Arg
CCT
[SRA]
Identical group No.654291 (5 seq.)
>WENV170620519
FUWD013033102
[FUWD] metagenome; unknown
652
578
-
Arg
CCT
[ENA]
¢þ
>WENV170628662
FUWD013250548
[FUWD] metagenome; unknown
4356
4430
+
Arg
CCT
[ENA]
¢þ
>SRA1025887
SRR035085.103094
454 Sequencing (SRP001806)
288
362
+
Arg
CCT
[SRA]
>SRA1033526
SRR035088.278921
454 Sequencing (SRP001809)
267
341
+
Arg
CCT
[SRA]
>SRA1043352
SRR035092.99448
454 Sequencing (SRP001813)
408
334
-
Arg
CCT
[SRA]
Identical group No.654315 (4 seq.)
>WENV170620123
FUWD013026221
[FUWD] metagenome; unknown
2414
2488
+
Arg
CCT
[ENA]
¢þ
>WENV170628256
FUWD013244073
[FUWD] metagenome; unknown
10922
10848
-
Arg
CCT
[ENA]
¢þ
>SRA1019527
SRR035082.471496
454 Sequencing (SRP001803)
264
338
+
Arg
CCT
[SRA]
>SRA1026077
SRR035085.138988
454 Sequencing (SRP001806)
311
237
-
Arg
CCT
[SRA]
Identical group No.654335 (1 seq.)
>SRA1026236
SRR035085.168690
454 Sequencing (SRP001806)
111
185
+
Arg
CCT
[SRA]
Identical group No.654350 (58 seq.)
>WENV180367480
OBOE01105734
[OBOE] marine metagenome; ENVO:00002010
286
212
-
Arg
CCT
[ENA]
¢þ
>WENV182540400
OJAJ01000190
[OJAJ] seawater metagenome; Sea water
3964
3892
-
Arg
CCT
[ENA]
¢þ
>WENV182540806
OJAQ01000002
[OJAQ] seawater metagenome; Sea water
22557
22629
+
Arg
CCT
[ENA]
¢þ
>WENV182544229
OJBF01000004
[OJBF] seawater metagenome; Sea water
12968
12896
-
Arg
CCT
[ENA]
¢þ
>WENV182544945
OJBL01000442
[OJBL] seawater metagenome; Sea water
1729
1657
-
Arg
CCT
[ENA]
¢þ
>WENV182548493
OJBW01000721
[OJBW] seawater metagenome; Sea water
806
878
+
Arg
CCT
[ENA]
¢þ
>WENV182550017
OJBZ01001719
[OJBZ] seawater metagenome; Sea water
2197
2269
+
Arg
CCT
[ENA]
¢þ
>WENV182553160
OJCR01000201
[OJCR] seawater metagenome; Sea water
8776
8848
+
Arg
CCT
[ENA]
¢þ
>WENV182554088
OJCT01000932
[OJCT] seawater metagenome; Sea water
195
267
+
Arg
CCT
[ENA]
¢þ
>WENV182557037
OJDI01000466
[OJDI] seawater metagenome; Sea water
1208
1280
+
Arg
CCT
[ENA]
¢þ
>WENV182558522
OJDM01010786
[OJDM] seawater metagenome; Sea water
379
307
-
Arg
CCT
[ENA]
¢þ
>WENV182561574
OJDX01000006
[OJDX] seawater metagenome; Sea water
16144
16072
-
Arg
CCT
[ENA]
¢þ
>WENV182561911
OJDY01000006
[OJDY] seawater metagenome; Sea water
40941
41013
+
Arg
CCT
[ENA]
¢þ
>WENV182562631
OJDZ01028095
[OJDZ] seawater metagenome; Sea water
341
269
-
Arg
CCT
[ENA]
¢þ
>WENV182562641
OJEA01000003
[OJEA] seawater metagenome; Sea water
68297
68369
+
Arg
CCT
[ENA]
¢þ
>WENV182563036
OJEB01000006
[OJEB] seawater metagenome; Sea water
24478
24406
-
Arg
CCT
[ENA]
¢þ
>WENV182564014
OJEE01000001
[OJEE] seawater metagenome; Sea water
26420
26348
-
Arg
CCT
[ENA]
¢þ
>WENV182569012
OJEY01000018
[OJEY] seawater metagenome; Sea water
21919
21847
-
Arg
CCT
[ENA]
¢þ
>WENV182569704
OJFB01000050
[OJFB] seawater metagenome; Sea water
24151
24223
+
Arg
CCT
[ENA]
¢þ
>WENV182571083
OJFG01000296
[OJFG] seawater metagenome; Sea water
6281
6209
-
Arg
CCT
[ENA]
¢þ
>WENV182573729
OJFP01018116
[OJFP] seawater metagenome; Sea water
508
580
+
Arg
CCT
[ENA]
¢þ
>WENV182574523
OJFS01000004
[OJFS] seawater metagenome; Sea water
26195
26123
-
Arg
CCT
[ENA]
¢þ
>WENV182575819
OJFW01004117
[OJFW] seawater metagenome; Sea water
784
856
+
Arg
CCT
[ENA]
¢þ
>WENV182576566
OJFY01000125
[OJFY] seawater metagenome; Sea water
2212
2140
-
Arg
CCT
[ENA]
¢þ
>WENV182576918
OJGA01001368
[OJGA] seawater metagenome; Sea water
285
213
-
Arg
CCT
[ENA]
¢þ
>WENV182577937
OJGM01000058
[OJGM] seawater metagenome; Sea water
4372
4300
-
Arg
CCT
[ENA]
¢þ
>WENV182580760
OJGW01011578
[OJGW] seawater metagenome; Sea water
875
947
+
Arg
CCT
[ENA]
¢þ
>WENV182582088
OJHA01000006
[OJHA] seawater metagenome; Sea water
42182
42254
+
Arg
CCT
[ENA]
¢þ
>WENV182582400
OJHB01000031
[OJHB] seawater metagenome; Sea water
21009
20937
-
Arg
CCT
[ENA]
¢þ
>WENV182583203
OJHD01001195
[OJHD] seawater metagenome; Sea water
2270
2342
+
Arg
CCT
[ENA]
¢þ
>WENV182584726
OJHG01006581
[OJHG] seawater metagenome; Sea water
1587
1515
-
Arg
CCT
[ENA]
¢þ
>WENV182586807
OJHK01005631
[OJHK] seawater metagenome; Sea water
692
620
-
Arg
CCT
[ENA]
¢þ
>WENV182587538
OJHN01000009
[OJHN] seawater metagenome; Sea water
23510
23582
+
Arg
CCT
[ENA]
¢þ
>WENV182588428
OJHT01001637
[OJHT] seawater metagenome; Sea water
989
917
-
Arg
CCT
[ENA]
¢þ
>WENV182592319
OJIR01000009
[OJIR] seawater metagenome; Sea water
26506
26434
-
Arg
CCT
[ENA]
¢þ
>WENV183053662
OLGP01000508
[OLGP] seawater metagenome; Sea water
1523
1451
-
Arg
CCT
[ENA]
¢þ
>WENV183054500
OLGU01000003
[OLGU] seawater metagenome; Sea water
147485
147557
+
Arg
CCT
[ENA]
¢þ
>WENV183054985
OLGW01000313
[OLGW] seawater metagenome; Sea water
3162
3090
-
Arg
CCT
[ENA]
¢þ
>WENV183058983
OLHS01000503
[OLHS] seawater metagenome; Sea water
1079
1151
+
Arg
CCT
[ENA]
¢þ
>WENV183059188
OLHU01000001
[OLHU] seawater metagenome; Sea water
147687
147759
+
Arg
CCT
[ENA]
¢þ
>WENV183060209
OLHX01000087
[OLHX] seawater metagenome; Sea water
4675
4603
-
Arg
CCT
[ENA]
¢þ
>WENV170568530
FLMP01047686
[FLMP] seawater metagenome; seawater
1155
1083
-
Arg
CCT
[ENA]
¢þ
>WENV170624090
FUWD013174962
[FUWD] metagenome; unknown
8632
8706
+
Arg
CCT
[ENA]
¢þ
>WENV170627255
FUWD013232416
[FUWD] metagenome; unknown
12306
12380
+
Arg
CCT
[ENA]
¢þ
>WENV170627256
FUWD013232420
[FUWD] metagenome; unknown
17869
17795
-
Arg
CCT
[ENA]
¢þ
>WENV170632375
FUWD013381221
[FUWD] metagenome; unknown
8632
8706
+
Arg
CCT
[ENA]
¢þ
>WENV170952773
MEHZ011613730
[MEHZ] marine metagenome; marine surface water
23335
23263
-
Arg
CCT
[ENA]
¢þ
>W141532255
JHET01000006
Actinomycetota
Microbacterium sp. CH12i [JHET]
81178
81250
+
Arg
CCT
[ENA]
¡û
>SRA1026350
SRR035085.191030
454 Sequencing (SRP001806)
181
107
-
Arg
CCT
[SRA]
>SRA1026473
SRR035085.213275
454 Sequencing (SRP001806)
181
107
-
Arg
CCT
[SRA]
>SRA1045729
SRR035093.158141
454 Sequencing (SRP001814)
392
464
+
Arg
CCT
[SRA]
>SRA1051613
SRR035098.38549
454 Sequencing (SRP001819)
207
133
-
Arg
CCT
[SRA]
>SRA1051672
SRR035098.55934
454 Sequencing (SRP001819)
50
122
+
Arg
CCT
[SRA]
>SRA1051682
SRR035098.57713
454 Sequencing (SRP001819)
207
133
-
Arg
CCT
[SRA]
>SRA1051820
SRR035098.82868
454 Sequencing (SRP001819)
50
122
+
Arg
CCT
[SRA]
>SRA1052526
SRR035098.220654
454 Sequencing (SRP001819)
144
72
-
Arg
CCT
[SRA]
>SRA1052536
SRR035098.222964
454 Sequencing (SRP001819)
190
116
-
Arg
CCT
[SRA]
>SRA1052723
SRR035098.261575
454 Sequencing (SRP001819)
134
206
+
Arg
CCT
[SRA]
Identical group No.654358 (5 seq.)
>WENV170623437
FUWD013151479
[FUWD] metagenome; unknown
768
842
+
Arg
CCT
[ENA]
¢þ
>WENV170631513
FUWD013355334
[FUWD] metagenome; unknown
5282
5356
+
Arg
CCT
[ENA]
¢þ
>SRA1026390
SRR035085.199968
454 Sequencing (SRP001806)
383
457
+
Arg
CCT
[SRA]
>SRA1026721
SRR035085.271358
454 Sequencing (SRP001806)
376
450
+
Arg
CCT
[SRA]
>SRA1044795
SRR035092.346566
454 Sequencing (SRP001813)
199
125
-
Arg
CCT
[SRA]
Identical group No.654367 (1 seq.)
>SRA1026441
SRR035085.207337
454 Sequencing (SRP001806)
70
144
+
Arg
CCT
[SRA]
Identical group No.654410 (14 seq.)
>WENV170627291
FUWD013232509
[FUWD] metagenome; unknown
1050
1124
+
Arg
CCT
[ENA]
¢þ
>SRA1026821
SRR035085.303567
454 Sequencing (SRP001806)
87
161
+
Arg
CCT
[SRA]
>SRA1032948
SRR035088.137250
454 Sequencing (SRP001809)
85
159
+
Arg
CCT
[SRA]
>SRA1036187
SRR035089.465834
454 Sequencing (SRP001810)
317
243
-
Arg
CCT
[SRA]
>SRA1040094
SRR035091.37846
454 Sequencing (SRP001812)
10
84
+
Arg
CCT
[SRA]
>SRA1040879
SRR035091.163265
454 Sequencing (SRP001812)
328
254
-
Arg
CCT
[SRA]
>SRA1041881
SRR035091.310269
454 Sequencing (SRP001812)
75
149
+
Arg
CCT
[SRA]
>SRA1042951
SRR035091.472725
454 Sequencing (SRP001812)
53
127
+
Arg
CCT
[SRA]
>SRA1044001
SRR035092.208534
454 Sequencing (SRP001813)
314
240
-
Arg
CCT
[SRA]
>SRA1047872
SRR035094.59292
454 Sequencing (SRP001815)
425
351
-
Arg
CCT
[SRA]
>SRA1048862
SRR035094.265935
454 Sequencing (SRP001815)
100
26
-
Arg
CCT
[SRA]
>SRA1049065
SRR035095.13539
454 Sequencing (SRP001816)
306
380
+
Arg
CCT
[SRA]
>SRA1049206
SRR035095.38023
454 Sequencing (SRP001816)
309
383
+
Arg
CCT
[SRA]
>SRA1049446
SRR035095.79463
454 Sequencing (SRP001816)
417
343
-
Arg
CCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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