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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CTT
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240835 (1 seq.)
>SRA1026644
SRR035085.248206
454 Sequencing (SRP001806)
222
148
-
Lys
CTT
[SRA]
Identical group No.272255 (1 seq.)
>SRA1025526
SRR035085.33729
454 Sequencing (SRP001806)
33
109
+
Lys
CTT
[SRA]
Identical group No.272298 (11 seq.)
>WENV170617549
FUWD012929501
[FUWD] metagenome; unknown
212
288
+
Lys
CTT
[ENA]
¢þ
>WENV170620356
FUWD013030264
[FUWD] metagenome; unknown
1893
1817
-
Lys
CTT
[ENA]
¢þ
>WENV170625248
FUWD013194035
[FUWD] metagenome; unknown
2729
2805
+
Lys
CTT
[ENA]
¢þ
>WENV170628493
FUWD013247842
[FUWD] metagenome; unknown
1893
1817
-
Lys
CTT
[ENA]
¢þ
>WENV170633493
FUWD013396979
[FUWD] metagenome; unknown
2729
2805
+
Lys
CTT
[ENA]
¢þ
>SRA1025739
SRR035085.73644
454 Sequencing (SRP001806)
108
184
+
Lys
CTT
[SRA]
>SRA1036771
SRR035089.611671
454 Sequencing (SRP001810)
43
119
+
Lys
CTT
[SRA]
>SRA1048205
SRR035094.128844
454 Sequencing (SRP001815)
346
422
+
Lys
CTT
[SRA]
>SRA1049070
SRR035095.14204
454 Sequencing (SRP001816)
250
326
+
Lys
CTT
[SRA]
>SRA1049560
SRR035095.95725
454 Sequencing (SRP001816)
222
298
+
Lys
CTT
[SRA]
>SRA1050309
SRR035095.234825
454 Sequencing (SRP001816)
78
154
+
Lys
CTT
[SRA]
Identical group No.272299 (5 seq.)
>WENV170623585
FUWD013159183
[FUWD] metagenome; unknown
198
274
+
Lys
CTT
[ENA]
¢þ
>WENV170631862
FUWD013368685
[FUWD] metagenome; unknown
198
274
+
Lys
CTT
[ENA]
¢þ
>SRA1025740
SRR035085.74116
454 Sequencing (SRP001806)
349
425
+
Lys
CTT
[SRA]
>SRA1025799
SRR035085.85586
454 Sequencing (SRP001806)
208
284
+
Lys
CTT
[SRA]
>SRA1026172
SRR035085.157737
454 Sequencing (SRP001806)
352
428
+
Lys
CTT
[SRA]
Identical group No.272301 (1 seq.)
>SRA1025763
SRR035085.79372
454 Sequencing (SRP001806)
284
357
+
Lys
CTT
[SRA]
Identical group No.272302 (13 seq.)
>WENV170616053
FUWD012875755
[FUWD] metagenome; unknown
560
484
-
Lys
CTT
[ENA]
¢þ
>WENV170616589
FUWD012892690
[FUWD] metagenome; unknown
266
342
+
Lys
CTT
[ENA]
¢þ
>WENV170624203
FUWD013177659
[FUWD] metagenome; unknown
97
21
-
Lys
CTT
[ENA]
¢þ
>WENV170632486
FUWD013383366
[FUWD] metagenome; unknown
97
21
-
Lys
CTT
[ENA]
¢þ
>SRA1017973
SRR035082.223176
454 Sequencing (SRP001803)
129
53
-
Lys
CTT
[SRA]
>SRA1018287
SRR035082.269545
454 Sequencing (SRP001803)
266
342
+
Lys
CTT
[SRA]
>SRA1025773
SRR035085.80455
454 Sequencing (SRP001806)
172
248
+
Lys
CTT
[SRA]
>SRA1026215
SRR035085.164453
454 Sequencing (SRP001806)
200
276
+
Lys
CTT
[SRA]
>SRA1026422
SRR035085.204921
454 Sequencing (SRP001806)
201
277
+
Lys
CTT
[SRA]
>SRA1029870
SRR035087.194931
454 Sequencing (SRP001808)
159
235
+
Lys
CTT
[SRA]
>SRA1032585
SRR035088.54066
454 Sequencing (SRP001809)
37
113
+
Lys
CTT
[SRA]
>SRA1034441
SRR035089.96844
454 Sequencing (SRP001810)
355
279
-
Lys
CTT
[SRA]
>SRA1048627
SRR035094.211844
454 Sequencing (SRP001815)
336
260
-
Lys
CTT
[SRA]
Identical group No.272311 (8 seq.)
>A171005351
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
361579
361653
+
Lys
CTT
-
¡û
>A171005352
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
363250
363324
+
Lys
CTT
-
¡û
>At0975
CP000300
Euryarchaeota
Methanococcoides burtonii DSM 6242 [CP000300]
2257451
2257524
+
Lys
CTT
[Ensembl]
¡û
>W1910229843
FOHQ01000002
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
282989
283063
+
Lys
CTT
[ENA]
¡û
>W1910575261
JRHO01000009
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
363634
363708
+
Lys
CTT
[ENA]
¡û
>W1910575262
JRHO01000009
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
363990
364064
+
Lys
CTT
[ENA]
¡û
>SRA1025819
SRR035085.88774
454 Sequencing (SRP001806)
168
244
+
Lys
CTT
[SRA]
>W1610000131
AADH02000006
Euryarchaeota
Methanococcoides burtonii DSM 6242 [AADH]
137463
137389
-
Lys
CTT
[ENA]
¡û
Identical group No.272365 (2 seq.)
>SRA1026161
SRR035085.156162
454 Sequencing (SRP001806)
66
141
+
Lys
CTT
[SRA]
>SRA1048734
SRR035094.237316
454 Sequencing (SRP001815)
183
256
+
Lys
CTT
[SRA]
Identical group No.453202 (7 seq.)
>WENV170621358
FUWD013056610
[FUWD] metagenome; unknown
1706
1778
+
Lys
CTT
[ENA]
¢þ
>WENV170629537
FUWD013273014
[FUWD] metagenome; unknown
1706
1778
+
Lys
CTT
[ENA]
¢þ
>WENV170720794
LSQX01166830
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1197
1270
+
Lys
CTT
[ENA]
¢þ
>SRA1025454
SRR035085.10182
454 Sequencing (SRP001806)
341
413
+
Lys
CTT
[SRA]
>SRA1030263
SRR035087.251993
454 Sequencing (SRP001808)
84
12
-
Lys
CTT
[SRA]
>SRA1035570
SRR035089.332756
454 Sequencing (SRP001810)
23
95
+
Lys
CTT
[SRA]
>SRA1035973
SRR035089.416381
454 Sequencing (SRP001810)
163
235
+
Lys
CTT
[SRA]
Identical group No.453211 (4 seq.)
>WENV170607942
FUWD010873170
[FUWD] metagenome; unknown
79
4
-
Lys
CTT
[ENA]
¢þ
>SRA1025477
SRR035085.18979
454 Sequencing (SRP001806)
315
240
-
Lys
CTT
[SRA]
>SRA1030973
SRR035087.356573
454 Sequencing (SRP001808)
75
1
-
Lys
CTT
[SRA]
>SRA1031364
SRR035087.419821
454 Sequencing (SRP001808)
79
4
-
Lys
CTT
[SRA]
Identical group No.453217 (5 seq.)
>WENV170605014
FUWD010441411
[FUWD] metagenome; unknown
101
28
-
Lys
CTT
[ENA]
¢þ
>SRA1019490
SRR035082.465660
454 Sequencing (SRP001803)
117
42
-
Lys
CTT
[SRA]
>SRA1025507
SRR035085.27760
454 Sequencing (SRP001806)
168
243
+
Lys
CTT
[SRA]
>SRA1026150
SRR035085.153450
454 Sequencing (SRP001806)
29
102
+
Lys
CTT
[SRA]
>SRA1029097
SRR035087.71977
454 Sequencing (SRP001808)
101
28
-
Lys
CTT
[SRA]
Identical group No.453223 (1 seq.)
>SRA1025539
SRR035085.35923
454 Sequencing (SRP001806)
90
163
+
Lys
CTT
[SRA]
Identical group No.453231 (1 seq.)
>SRA1025566
SRR035085.39923
454 Sequencing (SRP001806)
300
225
-
Lys
CTT
[SRA]
Identical group No.453245 (3 seq.)
>WENV170607833
FUWD010859527
[FUWD] metagenome; unknown
628
554
-
Lys
CTT
[ENA]
¢þ
>SRA1025639
SRR035085.55200
454 Sequencing (SRP001806)
472
398
-
Lys
CTT
[SRA]
>SRA1036487
SRR035089.531944
454 Sequencing (SRP001810)
120
194
+
Lys
CTT
[SRA]
Identical group No.453275 (2 seq.)
>WENV170611840
FUWD012415248
[FUWD] metagenome; unknown
341
413
+
Lys
CTT
[ENA]
¢þ
>SRA1025754
SRR035085.77392
454 Sequencing (SRP001806)
351
423
+
Lys
CTT
[SRA]
Identical group No.453305 (3 seq.)
>WENV170611849
FUWD012418837
[FUWD] metagenome; unknown
3
75
+
Lys
CTT
[ENA]
¢þ
>SRA1025911
SRR035085.107913
454 Sequencing (SRP001806)
13
85
+
Lys
CTT
[SRA]
>SRA1049097
SRR035095.18753
454 Sequencing (SRP001816)
173
99
-
Lys
CTT
[SRA]
Identical group No.453331 (4 seq.)
>WENV170280292
CERR01114303
[CERR] marine metagenome genome assembly TARA_068_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
594
519
-
Lys
CTT
[ENA]
¢þ
>WENV170422639
CEUN01174176
[CEUN] marine metagenome genome assembly TARA_124_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
10930
11005
+
Lys
CTT
[ENA]
¢þ
>WENV170944346
MDTG01413162
[MDTG] marine metagenome; seawater
3403
3478
+
Lys
CTT
[ENA]
¢þ
>SRA1026037
SRR035085.131285
454 Sequencing (SRP001806)
162
90
-
Lys
CTT
[SRA]
Identical group No.453355 (3 seq.)
>WENV170607852
FUWD010861273
[FUWD] metagenome; unknown
69
143
+
Lys
CTT
[ENA]
¢þ
>SRA1026170
SRR035085.157541
454 Sequencing (SRP001806)
76
150
+
Lys
CTT
[SRA]
>SRA1032137
SRR035087.560222
454 Sequencing (SRP001808)
67
141
+
Lys
CTT
[SRA]
Identical group No.453448 (2 seq.)
>WENV170597887
FUWD010017766
[FUWD] metagenome; unknown
4
79
+
Lys
CTT
[ENA]
¢þ
>SRA1026799
SRR035085.293249
454 Sequencing (SRP001806)
201
276
+
Lys
CTT
[SRA]
Identical group No.654267 (6 seq.)
>WENV170621493
FUWD013061040
[FUWD] metagenome; unknown
1559
1485
-
Lys
CTT
[ENA]
¢þ
>WENV170629675
FUWD013277251
[FUWD] metagenome; unknown
1559
1485
-
Lys
CTT
[ENA]
¢þ
>SRA1025745
SRR035085.74740
454 Sequencing (SRP001806)
232
158
-
Lys
CTT
[SRA]
>SRA1025948
SRR035085.114996
454 Sequencing (SRP001806)
256
182
-
Lys
CTT
[SRA]
>SRA1042196
SRR035091.352397
454 Sequencing (SRP001812)
78
4
-
Lys
CTT
[SRA]
>SRA1044589
SRR035092.306913
454 Sequencing (SRP001813)
310
236
-
Lys
CTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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