This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = GCC
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272309 (27 seq.)
>W1711404293
MFYH01000023
Unclassified
Candidatus Peribacteria bacterium RIFOXYA1_FULL_56_14 [MFYH]
30770
30694
-
Gly
GCC
[ENA]
¡û
>W1711404350
MFYI01000016
Unclassified
Candidatus Peribacteria bacterium RIFOXYA2_FULL_55_28 [MFYI]
58083
58159
+
Gly
GCC
[ENA]
¡û
>W1711404379
MFYJ01000007
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_54_35 [MFYJ]
73606
73530
-
Gly
GCC
[ENA]
¡û
>W1711404406
MFYK01000006
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_57_12 [MFYK]
16906
16982
+
Gly
GCC
[ENA]
¡û
>W1711404464
MFYL01000013
Unclassified
Candidatus Peribacteria bacterium RIFOXYB2_FULL_54_17 [MFYL]
312192
312268
+
Gly
GCC
[ENA]
¡û
>W1711404490
MFYM01000002
Unclassified
Candidatus Peribacteria bacterium RIFOXYC1_FULL_54_13 [MFYM]
84873
84949
+
Gly
GCC
[ENA]
¡û
>W1711404574
MFYO01000006
Unclassified
Candidatus Peribacteria bacterium RIFOXYC2_FULL_55_14 [MFYO]
54166
54242
+
Gly
GCC
[ENA]
¡û
>W1711404612
MFYP01000007
Unclassified
Candidatus Peribacteria bacterium RIFOXYC2_FULL_58_10 [MFYP]
8949
9025
+
Gly
GCC
[ENA]
¡û
>W1711404671
MFYQ01000025
Unclassified
Candidatus Peribacteria bacterium RIFOXYD1_FULL_54_13 [MFYQ]
53443
53519
+
Gly
GCC
[ENA]
¡û
>W1711404705
MFYR01000006
Unclassified
Candidatus Peribacteria bacterium RIFOXYD2_FULL_58_15 [MFYR]
33256
33180
-
Gly
GCC
[ENA]
¡û
>W1711582991
MNWP01000012
Unclassified
Candidatus Peregrinibacteria bacterium CG1_02_54_53 [MNWP]
6487
6563
+
Gly
GCC
[ENA]
¡û
>WENV180270766
OBEQ012202348
[OBEQ] groundwater metagenome; groundwater
1053
1129
+
Gly
GCC
[ENA]
¢þ
>WENV183689174
ORMF011400159
[ORMF] groundwater metagenome; groundwater
372
296
-
Gly
GCC
[ENA]
¢þ
>W1910717029
MFXR01000008
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_54_22 [MFXR]
21466
21390
-
Gly
GCC
[ENA]
¡û
>W1910717282
MFXX01000023
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_55_24 [MFXX]
14136
14212
+
Gly
GCC
[ENA]
¡û
>W1910717319
MFXY01000040
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_12_FULL_54_10 [MFXY]
20498
20574
+
Gly
GCC
[ENA]
¡û
>W1910717462
MFYC01000035
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_01_FULL_54_110 [MFYC]
32509
32585
+
Gly
GCC
[ENA]
¡û
>W1910717530
MFYE01000019
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_02_FULL_55_36 [MFYE]
9881
9957
+
Gly
GCC
[ENA]
¡û
>W1910717606
MFYG01000013
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_12_FULL_55_15 [MFYG]
44633
44709
+
Gly
GCC
[ENA]
¡û
>SRA1025805
SRR035085.86744
454 Sequencing (SRP001806)
421
345
-
Gly
GCC
[SRA]
>W1511618885
LCRQ01000001
Unclassified
Candidatus Peribacteria bacterium GW2011_GWB1_54_5 GW2011_GWB1_54_5 [LCRQ]
4317
4393
+
Gly
GCC
[ENA]
¡û
>W1511619028
LCRV01000010
Unclassified
Candidatus Peregrinibacteria bacterium GW2011_GWA2_54_9 GW2011_GWA2_54_9 [LCRV]
77
1
-
Gly
GCC
[ENA]
¡û
>C161050439
CP013062
Unclassified
Candidatus Peribacter riflensis [CP013062]
673717
673793
+
Gly
GCC
-
¡û
>C161050483
CP013063
Unclassified
Candidatus Peribacter riflensis [CP013063]
673872
673948
+
Gly
GCC
-
¡û
>C161050527
CP013064
Unclassified
Candidatus Peribacter riflensis [CP013064]
673803
673879
+
Gly
GCC
-
¡û
>C161050571
CP013065
Unclassified
Candidatus Peribacter riflensis [CP013065]
673596
673672
+
Gly
GCC
-
¡û
>C161050615
CP013066
Unclassified
Candidatus Peribacter riflensis [CP013066]
673871
673947
+
Gly
GCC
-
¡û
Identical group No.453294 (1 seq.)
>SRA1025856
SRR035085.95002
454 Sequencing (SRP001806)
111
187
+
Gly
GCC
[SRA]
Identical group No.453392 (1 seq.)
>SRA1026383
SRR035085.198331
454 Sequencing (SRP001806)
159
234
+
Gly
GCC
[SRA]
Identical group No.453409 (1 seq.)
>SRA1026556
SRR035085.227255
454 Sequencing (SRP001806)
111
36
-
Gly
GCC
[SRA]
Identical group No.654277 (1 seq.)
>SRA1025788
SRR035085.83612
454 Sequencing (SRP001806)
157
231
+
Gly
GCC
[SRA]
Identical group No.654302 (2 seq.)
>SRA1025964
SRR035085.118046
454 Sequencing (SRP001806)
98
24
-
Gly
GCC
[SRA]
>SRA1050542
SRR035095.287665
454 Sequencing (SRP001816)
91
165
+
Gly
GCC
[SRA]
Identical group No.654348 (9 seq.)
>WENV170598876
FUWD010052990
[FUWD] metagenome; unknown
432
506
+
Gly
GCC
[ENA]
¢þ
>WENV170624831
FUWD013187434
[FUWD] metagenome; unknown
346
272
-
Gly
GCC
[ENA]
¢þ
>WENV170633099
FUWD013391325
[FUWD] metagenome; unknown
346
272
-
Gly
GCC
[ENA]
¢þ
>SRA1026336
SRR035085.187784
454 Sequencing (SRP001806)
71
145
+
Gly
GCC
[SRA]
>SRA1026438
SRR035085.207234
454 Sequencing (SRP001806)
103
177
+
Gly
GCC
[SRA]
>SRA1031764
SRR035087.484317
454 Sequencing (SRP001808)
319
393
+
Gly
GCC
[SRA]
>SRA1033475
SRR035088.268573
454 Sequencing (SRP001809)
251
325
+
Gly
GCC
[SRA]
>SRA1033966
SRR035088.425241
454 Sequencing (SRP001809)
124
50
-
Gly
GCC
[SRA]
>SRA1050664
SRR035095.318368
454 Sequencing (SRP001816)
83
157
+
Gly
GCC
[SRA]
Identical group No.654362 (3 seq.)
>SRA1022169
SRR035083.362367
454 Sequencing (SRP001804)
351
279
-
Gly
GCC
[SRA]
>SRA1026409
SRR035085.202893
454 Sequencing (SRP001806)
236
164
-
Gly
GCC
[SRA]
>SRA1034040
SRR035088.462749
454 Sequencing (SRP001809)
14
86
+
Gly
GCC
[SRA]
Identical group No.654364 (7 seq.)
>W1711399782
MFGC01000010
Unclassified
Candidatus Falkowbacteria bacterium RIFOXYA2_FULL_47_9 [MFGC]
10632
10706
+
Gly
GCC
[ENA]
¡û
>W1711400149
MFGL01000025
Unclassified
Candidatus Falkowbacteria bacterium RIFOXYC2_FULL_47_12 [MFGL]
48678
48752
+
Gly
GCC
[ENA]
¡û
>WENV170603279
FUWD010298443
[FUWD] metagenome; unknown
17
89
+
Gly
GCC
[ENA]
¢þ
>WENV170613112
FUWD012780963
[FUWD] metagenome; unknown
446
374
-
Gly
GCC
[ENA]
¢þ
>SRA1026426
SRR035085.205526
454 Sequencing (SRP001806)
301
229
-
Gly
GCC
[SRA]
>SRA1048345
SRR035094.152164
454 Sequencing (SRP001815)
222
294
+
Gly
GCC
[SRA]
>SRA1048730
SRR035094.236294
454 Sequencing (SRP001815)
207
279
+
Gly
GCC
[SRA]
Identical group No.654382 (20 seq.)
>W131162458
AQYX01000174
Atribacterota
Atribacteria bacterium SCGC AAA252-M02 OP9 bacterium SCGC AAA252-M02 [AQYX]
1576
1650
+
Gly
GCC
[ENA]
¡û
>W131193731
ASOX01000020
Atribacterota
Atribacteria bacterium SCGC AB-164-P05 OP9 bacterium SCGC AB-164-P05 [ASOX]
2197
2271
+
Gly
GCC
[ENA]
¡û
>W131193767
ASPA01000029
Atribacterota
Atribacteria bacterium SCGC AAA255-G05 OP9 bacterium SCGC AAA255-G05 [ASPA]
8014
8088
+
Gly
GCC
[ENA]
¡û
>W131203645
ASZL01000006
Atribacterota
Atribacteria bacterium SCGC AB-164-M20 OP9 bacterium SCGC AB-164-M20 [ASZL]
1576
1650
+
Gly
GCC
[ENA]
¡û
>W141139544
AWNT01000010
Atribacterota
Atribacteria bacterium JGI OTU-1 [AWNT]
1576
1650
+
Gly
GCC
[ENA]
¡û
>WENV170600991
FUWD010151795
[FUWD] metagenome; unknown
520
594
+
Gly
GCC
[ENA]
¢þ
>WENV170618896
FUWD012991347
[FUWD] metagenome; unknown
726
652
-
Gly
GCC
[ENA]
¢þ
>WENV170626388
FUWD013221090
[FUWD] metagenome; unknown
1356
1282
-
Gly
GCC
[ENA]
¢þ
>WENV170695462
LGVE01097978
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
146
72
-
Gly
GCC
[ENA]
¢þ
>SRA1018715
SRR035082.336875
454 Sequencing (SRP001803)
103
177
+
Gly
GCC
[SRA]
>SRA1026544
SRR035085.224939
454 Sequencing (SRP001806)
170
244
+
Gly
GCC
[SRA]
>SRA1029498
SRR035087.137046
454 Sequencing (SRP001808)
121
195
+
Gly
GCC
[SRA]
>SRA1029966
SRR035087.209149
454 Sequencing (SRP001808)
275
201
-
Gly
GCC
[SRA]
>SRA1031047
SRR035087.364477
454 Sequencing (SRP001808)
17
91
+
Gly
GCC
[SRA]
>SRA1031164
SRR035087.382926
454 Sequencing (SRP001808)
87
161
+
Gly
GCC
[SRA]
>SRA1032365
SRR035087.612587
454 Sequencing (SRP001808)
312
386
+
Gly
GCC
[SRA]
>SRA1032789
SRR035088.103199
454 Sequencing (SRP001809)
158
232
+
Gly
GCC
[SRA]
>SRA1035990
SRR035089.421457
454 Sequencing (SRP001810)
449
523
+
Gly
GCC
[SRA]
>SRA1049957
SRR035095.168237
454 Sequencing (SRP001816)
474
400
-
Gly
GCC
[SRA]
>W1510076779
CDPL01000047
Atribacterota
Atribacteria bacterium JGI 0000014-F07 [CDPL]
5784
5858
+
Gly
GCC
[ENA]
¡û
Identical group No.654391 (8 seq.)
>WENV170622255
FUWD013094408
[FUWD] metagenome; unknown
1203
1129
-
Gly
GCC
[ENA]
¢þ
>WENV170630476
FUWD013309143
[FUWD] metagenome; unknown
1203
1129
-
Gly
GCC
[ENA]
¢þ
>SRA1026615
SRR035085.242322
454 Sequencing (SRP001806)
99
173
+
Gly
GCC
[SRA]
>SRA1030630
SRR035087.307002
454 Sequencing (SRP001808)
71
145
+
Gly
GCC
[SRA]
>SRA1032175
SRR035087.568285
454 Sequencing (SRP001808)
257
331
+
Gly
GCC
[SRA]
>SRA1032367
SRR035087.613066
454 Sequencing (SRP001808)
257
331
+
Gly
GCC
[SRA]
>SRA1036204
SRR035089.470970
454 Sequencing (SRP001810)
89
15
-
Gly
GCC
[SRA]
>SRA1036388
SRR035089.508690
454 Sequencing (SRP001810)
116
42
-
Gly
GCC
[SRA]
Identical group No.654398 (11 seq.)
>WENV170601746
FUWD010191354
[FUWD] metagenome; unknown
514
588
+
Gly
GCC
[ENA]
¢þ
>WENV170627294
FUWD013232509
[FUWD] metagenome; unknown
1359
1433
+
Gly
GCC
[ENA]
¢þ
>SRA1017797
SRR035082.197352
454 Sequencing (SRP001803)
88
14
-
Gly
GCC
[SRA]
>SRA1026694
SRR035085.262121
454 Sequencing (SRP001806)
62
136
+
Gly
GCC
[SRA]
>SRA1041884
SRR035091.310269
454 Sequencing (SRP001812)
382
457
+
Gly
GCC
[SRA]
>SRA1042136
SRR035091.344224
454 Sequencing (SRP001812)
20
94
+
Gly
GCC
[SRA]
>SRA1043167
SRR035092.62482
454 Sequencing (SRP001813)
192
266
+
Gly
GCC
[SRA]
>SRA1043832
SRR035092.182353
454 Sequencing (SRP001813)
112
186
+
Gly
GCC
[SRA]
>SRA1044886
SRR035092.366654
454 Sequencing (SRP001813)
288
214
-
Gly
GCC
[SRA]
>SRA1047875
SRR035094.59292
454 Sequencing (SRP001815)
116
42
-
Gly
GCC
[SRA]
>SRA1049449
SRR035095.79463
454 Sequencing (SRP001816)
108
34
-
Gly
GCC
[SRA]
Identical group No.654399 (4 seq.)
>WENV170623252
FUWD013142928
[FUWD] metagenome; unknown
1124
1198
+
Gly
GCC
[ENA]
¢þ
>WENV170631509
FUWD013355123
[FUWD] metagenome; unknown
1124
1198
+
Gly
GCC
[ENA]
¢þ
>SRA1017138
SRR035082.87117
454 Sequencing (SRP001803)
346
272
-
Gly
GCC
[SRA]
>SRA1026708
SRR035085.266581
454 Sequencing (SRP001806)
353
427
+
Gly
GCC
[SRA]
Identical group No.654401 (3 seq.)
>WENV170612730
FUWD012672263
[FUWD] metagenome; unknown
148
76
-
Gly
GCC
[ENA]
¢þ
>SRA1026735
SRR035085.276269
454 Sequencing (SRP001806)
17
89
+
Gly
GCC
[SRA]
>SRA1048031
SRR035094.95885
454 Sequencing (SRP001815)
157
85
-
Gly
GCC
[SRA]
Identical group No.654411 (1 seq.)
>SRA1026826
SRR035085.304690
454 Sequencing (SRP001806)
165
94
-
Gly
GCC
[SRA]
Identical group No.779783 (1 seq.)
>SRA1025606
SRR035085.48433
454 Sequencing (SRP001806)
223
150
-
Gly
GCC
[SRA]
Identical group No.779841 (1 seq.)
>SRA1026509
SRR035085.218295
454 Sequencing (SRP001806)
337
267
-
Gly
GCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK