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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormaldehyde_C1
Anticodon = CAG
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.91388 (3 seq.)
>WENV183703741
PDVJ01039831
[PDVJ] alkali sediment metagenome; glacial lake sediment
579
495
-
Leu
CAG
[ENA]
¢þ
>At0662
CP000780
Euryarchaeota
Methanoregula boonei 6A8 [CP000780]
1760640
1760724
+
Leu
CAG
[Ensembl]
¡û
>ENV09000361
ABSN01057628
Freshwater sediment metagenome lwFormaldehyde_C1
756
840
+
Leu
CAG
[ENA]
¡û
Identical group No.111659 (1 seq.)
>ENV09000133
ABSN01016128
Freshwater sediment metagenome lwFormaldehyde_C1
13
97
+
Leu
CAG
[ENA]
¡û
Identical group No.118344 (17 seq.)
>WENV181231159
OFEK01011827
[OFEK] activated sludge metagenome; Anaerobic digester
1096
1010
-
Leu
CAG
[ENA]
¢þ
>WENV181413434
OGCK01069247
[OGCK] hot springs metagenome; hot spring sediment
667
751
+
Leu
CAG
[ENA]
¢þ
>WENV170007168
AMWB02092291
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
3024
3110
+
Leu
CAG
[ENA]
¢þ
>WENV170642399
JFJP01040896
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
25406
25492
+
Leu
CAG
[ENA]
¢þ
>WENV170668936
LAHQ01134865
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
85
-1
-
Leu
CAG
[ENA]
¢þ
>WENV170668940
LAHR01000099
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
36490
36404
-
Leu
CAG
[ENA]
¢þ
>WENV170670370
LAHT01004052
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
24
110
+
Leu
CAG
[ENA]
¢þ
>WENV170670793
LAHU01001487
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
6439
6353
-
Leu
CAG
[ENA]
¢þ
>WENV170671428
LAHU01053594
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
137
51
-
Leu
CAG
[ENA]
¢þ
>WENV170970935
MTKX01000628
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
10730
10816
+
Leu
CAG
[ENA]
¢þ
>WENV170970962
MTKX01000784
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
57062
56976
-
Leu
CAG
[ENA]
¢þ
>WENV170975558
MTKZ01001271
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
34891
34805
-
Leu
CAG
[ENA]
¢þ
>WENV170975687
MTKZ01001855
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5541
5455
-
Leu
CAG
[ENA]
¢þ
>WENV170975689
MTKZ01001863
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
18116
18202
+
Leu
CAG
[ENA]
¢þ
>WENV170976094
MTKZ01004506
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
6094
6008
-
Leu
CAG
[ENA]
¢þ
>SRA1030981
SRR035087.357213
454 Sequencing (SRP001808)
219
305
+
Leu
CAG
[SRA]
>ENV09000144
ABSN01017880
Freshwater sediment metagenome lwFormaldehyde_C1
624
538
-
Leu
CAG
[ENA]
¡û
Identical group No.127432 (6 seq.)
>WENV183680613
ORMF010204253
[ORMF] groundwater metagenome; groundwater
3262
3348
+
Leu
CAG
[ENA]
¢þ
>WENV183686499
ORMF011011982
[ORMF] groundwater metagenome; groundwater
596
510
-
Leu
CAG
[ENA]
¢þ
>WENV183690610
ORMF011625162
[ORMF] groundwater metagenome; groundwater
1967
2053
+
Leu
CAG
[ENA]
¢þ
>WENV183693153
ORMF012034057
[ORMF] groundwater metagenome; groundwater
20915
20829
-
Leu
CAG
[ENA]
¢þ
>WENV170995923
MWWF01092891
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
255
338
+
Leu
CAG
[ENA]
¢þ
>ENV09000283
ABSN01044288
Freshwater sediment metagenome lwFormaldehyde_C1
626
540
-
Leu
CAG
[ENA]
¡û
Identical group No.135841 (8 seq.)
>WENV181165186
OEIR01646842
[OEIR] soil metagenome; soil
99
185
+
Leu
CAG
[ENA]
¢þ
>WENV181184551
OEKJ01000172
[OEKJ] metagenome; 1998
170
87
-
Leu
CAG
[ENA]
¢þ
>WENV181184764
OEKQ01000144
[OEKQ] metagenome; 1998
12251
12334
+
Leu
CAG
[ENA]
¢þ
>WENV170553249
CXWK01012458
[CXWK] wastewater metagenome; activated sludge
329
245
-
Leu
CAG
[ENA]
¢þ
>WENV170555939
CXWL01003302
[CXWL] groundwater metagenome; biofilm material
27966
27882
-
Leu
CAG
[ENA]
¢þ
>WENV170566073
FKKE01005805
[FKKE] freshwater metagenome; freshwater
4107
4024
-
Leu
CAG
[ENA]
¢þ
>WENV170566544
FKKE01044704
[FKKE] freshwater metagenome; freshwater
464
380
-
Leu
CAG
[ENA]
¢þ
>ENV09000254
ABSN01038651
Freshwater sediment metagenome lwFormaldehyde_C1
287
204
-
Leu
CAG
[ENA]
¡û
Identical group No.152646 (1 seq.)
>ENV09000096
ABSN01008921
Freshwater sediment metagenome lwFormaldehyde_C1
646
731
+
Leu
CAG
[ENA]
¡û
Identical group No.152647 (1 seq.)
>ENV09000158
ABSN01020288
Freshwater sediment metagenome lwFormaldehyde_C1
759
673
-
Leu
CAG
[ENA]
¡û
Identical group No.152652 (1 seq.)
>ENV09000278
ABSN01042827
Freshwater sediment metagenome lwFormaldehyde_C1
419
504
+
Leu
CAG
[ENA]
¡û
Identical group No.152653 (1 seq.)
>ENV09000279
ABSN01043970
Freshwater sediment metagenome lwFormaldehyde_C1
317
231
-
Leu
CAG
[ENA]
¡û
Identical group No.179297 (1 seq.)
>ENV09000347
ABSN01056339
Freshwater sediment metagenome lwFormaldehyde_C1
25
107
+
Leu
CAG
[ENA]
¡û
Identical group No.207315 (2 seq.)
>ENV09000401
ABSN01064429
Freshwater sediment metagenome lwFormaldehyde_C1
480
396
-
Leu
CAG
[ENA]
¡û
>C11117274
CP002568
Alphaproteobacteria
Polymorphum gilvum SL003B-26A1 [CP002568]
4253817
4253733
-
Leu
CAG
[Ensembl]
¡û
Identical group No.215856 (3 seq.)
>WENV170961646
MLJW01000325
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
5609
5525
-
Leu
CAG
[ENA]
¢þ
>ENV09000186
ABSN01026159
Freshwater sediment metagenome lwFormaldehyde_C1
697
781
+
Leu
CAG
[ENA]
¡û
>ENV09000885
ABSP01056635
Freshwater sediment metagenome lwMethane_C1
330
414
+
Leu
CAG
[ENA]
¡û
Identical group No.217047 (1 seq.)
>ENV09000281
ABSN01044269
Freshwater sediment metagenome lwFormaldehyde_C1
447
363
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK