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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = CAT
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256228 (1 seq.)
>SRA1002529
SRR001325.103422
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
83
9
-
Met
CAT
[SRA]
Identical group No.266334 (1 seq.)
>SRA1002353
SRR001322.58866
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
28
104
+
Met
CAT
[SRA]
Identical group No.381057 (1 seq.)
>SRA1002461
SRR001324.34939
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
115
39
-
Met
CAT
[SRA]
Identical group No.562809 (1 seq.)
>SRA1002494
SRR001325.9626
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
77
4
-
Met
CAT
[SRA]
Identical group No.628133 (1 seq.)
>SRA1002351
SRR001322.54555
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
27
102
+
Met
CAT
[SRA]
Identical group No.628134 (1 seq.)
>SRA1002362
SRR001322.71991
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
104
29
-
Met
CAT
[SRA]
Identical group No.639917 (1 seq.)
>SRA1002440
SRR001323.149686
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
40
114
+
Met
CAT
[SRA]
Identical group No.726858 (2 seq.)
>SRA1002454
SRR001324.21346
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
19
90
+
Met
CAT
[SRA]
>SRA1002481
SRR001324.72716
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
19
90
+
Met
CAT
[SRA]
Identical group No.726859 (1 seq.)
>SRA1002455
SRR001324.23157
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
24
96
+
Met
CAT
[SRA]
Identical group No.761291 (1 seq.)
>SRA1002366
SRR001322.84452
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
48
119
+
Met
CAT
[SRA]
Identical group No.771057 (1 seq.)
>SRA1002395
SRR001323.43298
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
80
6
-
Met
CAT
[SRA]
Identical group No.771061 (1 seq.)
>SRA1002416
SRR001323.88159
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
80
6
-
Met
CAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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