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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = GCT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8651 (8 seq.)
>WENV170017196
BART01000925
[BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula
283
190
-
Ser
GCT
[ENA]
¢þ
>WENV170017545
BARU01000235
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
1493
1586
+
Ser
GCT
[ENA]
¢þ
>WENV170017596
BARU01002948
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
201
294
+
Ser
GCT
[ENA]
¢þ
>WENV170018045
BARV01006657
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
421
514
+
Ser
GCT
[ENA]
¢þ
>WENV170018416
BARW01012315
[BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula
137
230
+
Ser
GCT
[ENA]
¢þ
>WENV170647748
JREQ01003834
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
99
6
-
Ser
GCT
[ENA]
¢þ
>WENV170648091
JRER01004649
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
1255
1348
+
Ser
GCT
[ENA]
¢þ
>SRA1002411
SRR001323.72759
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
12
105
+
Ser
GCT
[SRA]
Identical group No.10538 (1 seq.)
>SRA1002476
SRR001324.61091
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
90
-1
-
Ser
GCT
[SRA]
Identical group No.108909 (1 seq.)
>SRA1002369
SRR001322.95722
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
96
9
-
Ser
GCT
[SRA]
Identical group No.176343 (1 seq.)
>SRA1002374
SRR001322.113002
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
28
110
+
Ser
GCT
[SRA]
Identical group No.213171 (1 seq.)
>SRA1002355
SRR001322.63642
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
103
20
-
Ser
GCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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