tRNA genes clustered and arranged according to each identical group

Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)

Anticodon = GGC

HIT: 8 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.250630 (3 seq.)
>SRA1002538 SRR001326.2882 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 31 107 + Ala GGC [SRA]
>SRA1002544 SRR001326.39893 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 24 100 + Ala GGC [SRA]
>SRA1002553 SRR001326.73461 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 9 85 + Ala GGC [SRA]
Identical group No.250631 (1 seq.)
>SRA1002541 SRR001326.24664 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 91 14 - Ala GGC [SRA]
Identical group No.266333 (1 seq.)
>SRA1002342 SRR001322.29444 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 78 1 - Ala GGC [SRA]
Identical group No.266336 (1 seq.)
>SRA1002368 SRR001322.92104 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 105 28 - Ala GGC [SRA]
Identical group No.453564 (29 seq.)
>W131162447 AQYX01000032 candidate division OP9 candidate division OP9 bacterium SCGC AAA252-M02 [AQYX] 1173 1248 + Ala GGC [ENA]
>W131193763 ASPA01000029 candidate division OP9 candidate division OP9 bacterium SCGC AAA255-G05 [ASPA] 3945 4020 + Ala GGC [ENA]
>W131193791 ASPB01000061 candidate division OP9 candidate division OP9 bacterium SCGC AB-164-D21 [ASPB] 786 711 - Ala GGC [ENA]
>WENV181412754 OGCK01006644 [OGCK] hot springs metagenome; hot spring sediment 1157 1082 - Ala GGC [ENA]
>WENV183514225 OMKS01013950 [OMKS] sediment metagenome; hot spring sediment 4400 4325 - Ala GGC [ENA]
>WENV170016650 BARS01000057 [BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula 1573 1648 + Ala GGC [ENA]
>WENV170016660 BARS01000428 [BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula 236 311 + Ala GGC [ENA]
>WENV170017006 BARS01039742 [BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula 264 339 + Ala GGC [ENA]
>WENV170017202 BART01001051 [BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula 1787 1862 + Ala GGC [ENA]
>WENV170017253 BART01004757 [BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula 169 244 + Ala GGC [ENA]
>WENV170017882 BARU01036801 [BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula 543 468 - Ala GGC [ENA]
>WENV170018057 BARV01007606 [BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula 1001 926 - Ala GGC [ENA]
>WENV170018336 BARW01002372 [BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula 208 283 + Ala GGC [ENA]
>WENV170018445 BARW01018342 [BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula 131 206 + Ala GGC [ENA]
>WENV170620543 FUWD013033533 [FUWD] metagenome; unknown 835 910 + Ala GGC [ENA]
>WENV170628686 FUWD013250959 [FUWD] metagenome; unknown 835 910 + Ala GGC [ENA]
>WENV170678053 LDZT01010705 [LDZT] terrestrial metagenome; oil reservoir sample SB1 20540 20465 - Ala GGC [ENA]
>WENV170679161 LDZU01008750 [LDZU] terrestrial metagenome; oil reservoir sample SB2 20706 20631 - Ala GGC [ENA]
>WENV170693716 LGVC01049714 [LGVC] marine sediment metagenome; sample #5133, Elevator 3A push core 47, collected at Hydrate Ridge North during Jason II dive 331 256 - Ala GGC [ENA]
>WENV170694225 LGVD01022749 [LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at 4676 4751 + Ala GGC [ENA]
>W1910870320 NCRO01000111 CandidatusAtribacteria Candidatus Atribacteria bacterium RS-JS1 (NCRO) 11881 11806 - Ala GGC [ENA]
>SRA1002456 SRR001324.23970 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 94 19 - Ala GGC [SRA]
>SRA1002467 SRR001324.42611 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 94 19 - Ala GGC [SRA]
>SRA1002491 SRR001324.104445 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 94 19 - Ala GGC [SRA]
>SRA1017652 SRR035082.175639 454 Sequencing (SRP001803) 377 452 + Ala GGC [SRA]
>SRA1030431 SRR035087.278771 454 Sequencing (SRP001808) 183 258 + Ala GGC [SRA]
>SRA1034675 SRR035089.148704 454 Sequencing (SRP001810) 284 209 - Ala GGC [SRA]
>SRA1035123 SRR035089.241798 454 Sequencing (SRP001810) 320 245 - Ala GGC [SRA]
>W1510076775 CDPL01000047 Atribacteria Atribacteria bacterium JGI 0000014-F07 [CDPL] 1798 1873 + Ala GGC [ENA]
Identical group No.525508 (3 seq.)
>WENV170017886 BARU01038183 [BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula 11 86 + Ala GGC [ENA]
>WENV170018492 BARW01027559 [BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula 617 542 - Ala GGC [ENA]
>SRA1002552 SRR001326.72651 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 126 52 - Ala GGC [SRA]
Identical group No.573347 (1 seq.)
>SRA1002472 SRR001324.53891 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 81 8 - Ala GGC [SRA]
Identical group No.726863 (1 seq.)
>SRA1002477 SRR001324.63276 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 92 18 - Ala GGC [SRA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

BACK