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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = TTG
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455542 (16 seq.)
>A171003544
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
286309
286234
-
Gln
TTG
-
¡û
>A171006516
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
1549457
1549532
+
Gln
TTG
-
¡û
>WENV180665223
OCVV011182197
[OCVV] gut metagenome; gut
1070
1144
+
Gln
TTG
[ENA]
¢þ
>WENV180665224
OCVV011182197
[OCVV] gut metagenome; gut
1070
1144
+
Gln
TTG
[ENA]
¢þ
>WENV180667121
OCVV011228382
[OCVV] gut metagenome; gut
1300
1225
-
Gln
TTG
[ENA]
¢þ
>WENV180667122
OCVV011228382
[OCVV] gut metagenome; gut
1300
1225
-
Gln
TTG
[ENA]
¢þ
>WENV181606996
OGLM01002525
[OGLM] metagenome; Human gut stool
5251
5176
-
Gln
TTG
[ENA]
¢þ
>WENV181655737
OGOB01000866
[OGOB] metagenome; Human gut stool
5172
5097
-
Gln
TTG
[ENA]
¢þ
>WENV181772551
OGRD01006491
[OGRD] human gut metagenome; faeces
2971
3046
+
Gln
TTG
[ENA]
¢þ
>WENV182525531
OIWT01002798
[OIWT] human gut metagenome; faeces
10975
11050
+
Gln
TTG
[ENA]
¢þ
>WENV183045397
OLGE01010280
[OLGE] human gut metagenome; faeces
477
402
-
Gln
TTG
[ENA]
¢þ
>WENV183382865
OLYL01025504
[OLYL] human gut metagenome; feces
76
1
-
Gln
TTG
[ENA]
¢þ
>WENV183409977
OMAG01027426
[OMAG] human gut metagenome; feces
893
818
-
Gln
TTG
[ENA]
¢þ
>WENV183439048
OMCF01025504
[OMCF] human gut metagenome; feces
76
1
-
Gln
TTG
[ENA]
¢þ
>WENV183517732
OMNP01009937
[OMNP] human gut metagenome; feces
1485
1560
+
Gln
TTG
[ENA]
¢þ
>W1610011050
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
23064
23139
+
Gln
TTG
[ENA]
¡û
Identical group No.456285 (9 seq.)
>A171003711
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1474132
1474060
-
Gln
TTG
-
¡û
>WENV180470104
OBYM01064800
[OBYM] human gut metagenome; faeces
160
232
+
Gln
TTG
[ENA]
¢þ
>WENV180620482
OCQB01097612
[OCQB] human gut metagenome; human gut
342
414
+
Gln
TTG
[ENA]
¢þ
>WENV180963283
ODUN01110924
[ODUN] human metagenome; G_DNA_Stool
311
239
-
Gln
TTG
[ENA]
¢þ
>WENV181035833
ODXP01000015
[ODXP] human metagenome; G_DNA_Stool
141559
141631
+
Gln
TTG
[ENA]
¢þ
>WENV181089177
OEBA01015297
[OEBA] human metagenome; G_DNA_Stool
1032
960
-
Gln
TTG
[ENA]
¢þ
>WENV182535783
OIXH01000001
[OIXH] human gut metagenome; faeces
312232
312159
-
Gln
TTG
[ENA]
¢þ
>WENV183038990
OLGB01002328
[OLGB] human gut metagenome; faeces
17643
17716
+
Gln
TTG
[ENA]
¢þ
>WENV183040428
OLGD01000006
[OLGD] human gut metagenome; faeces
312231
312158
-
Gln
TTG
[ENA]
¢þ
Identical group No.488105 (9 seq.)
>A171003625
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
944693
944767
+
Gln
TTG
-
¡û
>A171006629
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1804738
1804812
+
Gln
TTG
-
¡û
>W141000061
AADL01001298
Unclassified
mine drainage metagenome Group III [AADL]
7213
7287
+
Gln
TTG
[ENA]
¡û
>W141000097
AADL01001573
Unclassified
mine drainage metagenome Group III [AADL]
2273
2201
-
Gln
TTG
[ENA]
¡û
>W141000131
AADL01001867
Unclassified
mine drainage metagenome Group III [AADL]
1945
2017
+
Gln
TTG
[ENA]
¡û
>W1610000069
AABC05000011
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
71759
71833
+
Gln
TTG
[ENA]
¡û
>WENV077069
AADL01001298
Acid Mine Drainage microbial communities from Richmond mine
7213
7290
+
Gln
TTG
[ENA]
>WENV077104
AADL01001573
Acid Mine Drainage microbial communities from Richmond mine
2273
2198
-
Gln
TTG
[ENA]
>WENV077139
AADL01001867
Acid Mine Drainage microbial communities from Richmond mine
1945
2020
+
Gln
TTG
[ENA]
Identical group No.488109 (5 seq.)
>A171007760
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
281103
281028
-
Gln
TTG
-
¡û
>A171007797
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
263820
263745
-
Gln
TTG
-
¡û
>W141000109
AADL01001643
Unclassified
mine drainage metagenome Group III [AADL]
1377
1452
+
Gln
TTG
[ENA]
¡û
>ENV09002137
ACXJ01010336
Mine drainage metagenome Contig1
5204
5129
-
Gln
TTG
[ENA]
¡û
>WENV077117
AADL01001643
Acid Mine Drainage microbial communities from Richmond mine
1377
1454
+
Gln
TTG
[ENA]
Identical group No.541355 (1 seq.)
>At2028
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
84957
84885
-
Gln
TTG
[Ensembl]
¡û
Identical group No.551695 (2 seq.)
>A178000309
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
583735
583856
+
Gln
TTG
-
¡û
>A179000145
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
367578
367458
-
Gln
TTG
-
¡û
Identical group No.563626 (1 seq.)
>A171000316
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1346880
1346807
-
Gln
TTG
-
¡û
Identical group No.563646 (1 seq.)
>A171002558
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
336199
336124
-
Gln
TTG
-
¡û
Identical group No.564825 (2 seq.)
>At1738
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
563505
563577
+
Gln
TTG
[Ensembl]
¡û
>W1910469087
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
408699
408627
-
Gln
TTG
[ENA]
¡û
Identical group No.582493 (2 seq.)
>At1985
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1533709
1533781
+
Gln
TTG
[Ensembl]
¡û
>W1911681188
QJSM01000044
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
23439
23514
+
Gln
TTG
[ENA]
¡û
Identical group No.641261 (1 seq.)
>CL171500013
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
47460
47576
+
Gln
TTG
-
¡û
Identical group No.647079 (1 seq.)
>C151068562
CP010426
Unclassified
archaeon GW2011_AR20 [CP010426]
179393
179321
-
Gln
TTG
-
¡û
Identical group No.647538 (1 seq.)
>A171005731
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
1061996
1062070
+
Gln
TTG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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