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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
51 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1024184
SRR035084.268151
340609
Actinomycetota
GCC
Gly
>SRA1023161
SRR035084.24481
235615
Actinomycetota
TGC
Ala
>SRA1023721
SRR035084.160802
235615
Actinomycetota
TGC
Ala
>SRA1023872
SRR035084.197102
235615
Actinomycetota
TGC
Ala
>SRA1024429
SRR035084.320942
235615
Actinomycetota
TGC
Ala
>SRA1024523
SRR035084.342684
235615
Actinomycetota
TGC
Ala
>SRA1024973
SRR035084.451154
235615
Actinomycetota
TGC
Ala
>SRA1025046
SRR035084.467454
235615
Actinomycetota
TGC
Ala
>SRA1025342
SRR035084.557361
235615
Actinomycetota
TGC
Ala
>SRA1023571
SRR035084.127162
153188
Actinomycetota
CAT
Met
>SRA1024808
SRR035084.408518
153188
Actinomycetota
CAT
Met
>SRA1024355
SRR035084.306469
185606
Actinomycetota
CGG
Pro
>SRA1024474
SRR035084.333093
185606
Actinomycetota
CGG
Pro
>SRA1023545
SRR035084.119741
339308
Actinomycetota
CTG
Gln
>SRA1023714
SRR035084.158510
339308
Actinomycetota
CTG
Gln
>SRA1023776
SRR035084.173600
339308
Actinomycetota
CTG
Gln
>SRA1025204
SRR035084.514300
339308
Actinomycetota
CTG
Gln
>SRA1025334
SRR035084.554868
50066
Actinomycetota
GGA
Ser
>SRA1024007
SRR035084.227376
114484
Actinomycetota
GTA
Tyr
>SRA1023634
SRR035084.139304
236241
Actinomycetota
TAC
Val
>SRA1024019
SRR035084.231317
236241
Actinomycetota
TAC
Val
>SRA1024775
SRR035084.398526
236241
Actinomycetota
TAC
Val
>SRA1023580
SRR035084.128970
255588
Actinomycetota
CCG
Arg
>SRA1023185
SRR035084.30991
186463
Actinomycetota
GAT
Ile
>SRA1023493
SRR035084.110642
186463
Actinomycetota
GAT
Ile
>SRA1024704
SRR035084.380461
186463
Actinomycetota
GAT
Ile
>SRA1024909
SRR035084.434105
186463
Actinomycetota
GAT
Ile
>SRA1025292
SRR035084.543285
186463
Actinomycetota
GAT
Ile
>SRA1025155
SRR035084.501080
105043
Actinomycetota
TAG
Leu
>SRA1023186
SRR035084.30991
245559
Actinomycetota
TGC
Ala
>SRA1024705
SRR035084.380461
245559
Actinomycetota
TGC
Ala
>SRA1025229
SRR035084.522539
245559
Actinomycetota
TGC
Ala
>SRA1023894
SRR035084.201867
245899
Actinomycetota
ACG
Arg
>SRA1023933
SRR035084.210271
245899
Actinomycetota
ACG
Arg
>SRA1024337
SRR035084.302375
245899
Actinomycetota
ACG
Arg
>SRA1024494
SRR035084.337630
245899
Actinomycetota
ACG
Arg
>SRA1024665
SRR035084.372476
344531
Actinomycetota
GCC
Gly
>SRA1025178
SRR035084.509315
344531
Actinomycetota
GCC
Gly
>SRA1023326
SRR035084.72218
411983
Actinomycetota
TCC
Gly
>SRA1023782
SRR035084.174659
411983
Actinomycetota
TCC
Gly
>SRA1023794
SRR035084.177681
411983
Actinomycetota
TCC
Gly
>SRA1024735
SRR035084.389954
411983
Actinomycetota
TCC
Gly
>SRA1025299
SRR035084.544703
411983
Actinomycetota
TCC
Gly
>SRA1024667
SRR035084.372476
379302
Actinomycetota
GAC
Val
>SRA1025318
SRR035084.550324
290785
Actinomycetota
TTT
Lys
>SRA1025363
SRR035084.564851
290785
Actinomycetota
TTT
Lys
>SRA1024185
SRR035084.268151
413961
Actinomycetota
GCA
Cys
>SRA1024666
SRR035084.372476
425058
Actinomycetota
GCA
Cys
>SRA1024175
SRR035084.266994
344394
Actinomycetota
CTG
Gln
>SRA1025099
SRR035084.484263
344394
Actinomycetota
CTG
Gln
>SRA1025266
SRR035084.534455
344394
Actinomycetota
CTG
Gln
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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