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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
13 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1002802
SRR002326.29522
780161
Alphaproteobacteria
GCA
Cys
>SRA1003113
SRR002326.207001
780161
Alphaproteobacteria
GCA
Cys
>SRA1003032
SRR002326.162748
655018
Alphaproteobacteria
TTC
Glu
>SRA1003304
SRR002326.376893
655018
Alphaproteobacteria
TTC
Glu
>SRA1004325
SRR002328.277431
655018
Alphaproteobacteria
TTC
Glu
>SRA1002905
SRR002326.93741
181193
Alphaproteobacteria
GAG
Leu
>SRA1003556
SRR002327.27793
451756
Alphaproteobacteria
CCA
Trp
>SRA1003707
SRR002327.135911
451756
Alphaproteobacteria
CCA
Trp
>SRA1004165
SRR002328.179585
451756
Alphaproteobacteria
CCA
Trp
>SRA1003558
SRR002327.31131
46439
Alphaproteobacteria
CGA
Ser
>SRA1003652
SRR002327.96522
46439
Alphaproteobacteria
CGA
Ser
>SRA1004278
SRR002328.244579
452755
Alphaproteobacteria
TAC
Val
>SRA1004327
SRR002328.278830
661074
Alphaproteobacteria
GCC
Gly
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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