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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
42 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170557129
CXWL01019753
454394
Gammaproteobacteria
GTT
Asn
>WENV170557128
CXWL01019753
273327
Gammaproteobacteria
ACG
Arg
>WENV170557160
CXWL01020351
459731
Gammaproteobacteria
GGT
Thr
>WENV170557159
CXWL01020351
780093
Gammaproteobacteria
TCC
Gly
>WENV170557193
CXWL01020940
454388
Gammaproteobacteria
TAC
Val
>WENV170557313
CXWL01024005
290071
Gammaproteobacteria
GAT
Ile
>WENV170557314
CXWL01024005
452579
Gammaproteobacteria
TGC
Ala
>WENV170557766
CXWL01036778
270692
Gammaproteobacteria
CAT
Met
>WENV170558205
CXWL01056780
273025
Gammaproteobacteria
CCT
Arg
>WENV170558228
CXWL01058151
780156
Gammaproteobacteria
CCC
Gly
>WENV170559113
CXWL01110713
86946
Gammaproteobacteria
TGA
Ser
>WENV170559159
CXWL01112337
273024
Gammaproteobacteria
CAT
Met
>WENV170559196
CXWL01113907
452337
Gammaproteobacteria
GTT
Asn
>WENV170559225
CXWL01114946
779594
Gammaproteobacteria
CCC
Gly
>WENV170559275
CXWL01117416
455188
Gammaproteobacteria
TAC
Val
>WENV170559304
CXWL01118473
180135
Gammaproteobacteria
CAA
Leu
>WENV170559324
CXWL01119237
112422
Gammaproteobacteria
CAG
Leu
>WENV170559364
CXWL01120504
30384
Gammaproteobacteria
TGA
Ser
>WENV170559395
CXWL01121418
455188
Gammaproteobacteria
TAC
Val
>WENV170559445
CXWL01123850
46100
Gammaproteobacteria
GGA
Ser
>WENV170559472
CXWL01124816
281567
Gammaproteobacteria
CAT
Met
>WENV170559474
CXWL01124916
275185
Gammaproteobacteria
CAT
Met
>WENV170559486
CXWL01125487
455856
Gammaproteobacteria
TGT
Thr
>WENV170559501
CXWL01126137
271411
Gammaproteobacteria
GGG
Pro
>WENV170559511
CXWL01126647
455188
Gammaproteobacteria
TAC
Val
>WENV170559599
CXWL01132716
274252
Gammaproteobacteria
CAT
Met
>WENV170559665
CXWL01135613
452337
Gammaproteobacteria
GTT
Asn
>WENV170559677
CXWL01136664
271411
Gammaproteobacteria
GGG
Pro
>WENV170559717
CXWL01141634
273059
Gammaproteobacteria
CCT
Arg
>WENV170559745
CXWL01144605
455188
Gammaproteobacteria
TAC
Val
>WENV170559754
CXWL01146741
656971
Gammaproteobacteria
TTG
Gln
>WENV170559801
CXWL01151842
270584
Gammaproteobacteria
ACG
Arg
>WENV170559809
CXWL01153526
112369
Gammaproteobacteria
GAG
Leu
>WENV170559815
CXWL01154316
45906
Gammaproteobacteria
GGA
Ser
>WENV170559819
CXWL01154935
87120
Gammaproteobacteria
TGA
Ser
>WENV170559838
CXWL01158767
180135
Gammaproteobacteria
CAA
Leu
>WENV170559842
CXWL01159882
780010
Gammaproteobacteria
CCC
Gly
>WENV170559845
CXWL01160483
460690
Gammaproteobacteria
TGT
Thr
>WENV170559851
CXWL01161389
3393
Gammaproteobacteria
>WENV170559902
CXWL01171222
781634
Gammaproteobacteria
GCA
Cys
>WENV170559915
CXWL01174819
87454
Gammaproteobacteria
GGA
Ser
>WENV170559952
CXWL01183449
45906
Gammaproteobacteria
GGA
Ser
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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