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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
21 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1003851
SRR002327.234449
336760
Betaproteobacteria
GAT
Ile
>SRA1003606
SRR002327.65505
336760
Betaproteobacteria
GAT
Ile
>SRA1003630
SRR002327.76046
286012
Betaproteobacteria
CAT
Met
>SRA1003599
SRR002327.59901
465310
Betaproteobacteria
TGC
Ala
>SRA1003618
SRR002327.69569
455934
Betaproteobacteria
TTC
Glu
>SRA1003651
SRR002327.96503
456398
Betaproteobacteria
GAA
Phe
>SRA1003585
SRR002327.50024
456398
Betaproteobacteria
GAA
Phe
>SRA1003658
SRR002327.101803
456400
Betaproteobacteria
TTC
Glu
>SRA1003654
SRR002327.98037
452595
Betaproteobacteria
GTT
Asn
>SRA1003624
SRR002327.71906
452595
Betaproteobacteria
GTT
Asn
>SRA1003623
SRR002327.71906
452595
Betaproteobacteria
GTT
Asn
>SRA1003733
SRR002327.150608
457359
Betaproteobacteria
TTT
Lys
>SRA1003835
SRR002327.219092
273483
Betaproteobacteria
ACG
Arg
>SRA1003728
SRR002327.146921
273483
Betaproteobacteria
ACG
Arg
>SRA1003643
SRR002327.87127
273483
Betaproteobacteria
ACG
Arg
>SRA1003602
SRR002327.62690
273483
Betaproteobacteria
ACG
Arg
>SRA1003869
SRR002327.248035
273481
Betaproteobacteria
GGG
Pro
>SRA1003685
SRR002327.120926
273481
Betaproteobacteria
GGG
Pro
>SRA1003535
SRR002327.6310
273481
Betaproteobacteria
GGG
Pro
>SRA1003778
SRR002327.180594
780860
Betaproteobacteria
GCA
Cys
>SRA1003614
SRR002327.68507
282077
Betaproteobacteria
TTG
Gln
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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