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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
16 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1003948
SRR002328.56313
297043
Betaproteobacteria
CAT
Met
>SRA1003976
SRR002328.68302
465310
Betaproteobacteria
TGC
Ala
>SRA1004037
SRR002328.109162
452596
Betaproteobacteria
GTT
Asn
>SRA1003939
SRR002328.50074
477700
Betaproteobacteria
GCC
Gly
>SRA1004213
SRR002328.203574
780146
Betaproteobacteria
CCC
Gly
>SRA1004149
SRR002328.172717
452595
Betaproteobacteria
GTT
Asn
>SRA1004019
SRR002328.98486
452595
Betaproteobacteria
GTT
Asn
>SRA1004018
SRR002328.98486
452595
Betaproteobacteria
GTT
Asn
>SRA1003969
SRR002328.65499
452595
Betaproteobacteria
GTT
Asn
>SRA1004137
SRR002328.167224
457359
Betaproteobacteria
TTT
Lys
>SRA1003998
SRR002328.89399
457359
Betaproteobacteria
TTT
Lys
>SRA1004158
SRR002328.176774
283585
Betaproteobacteria
CAT
Met
>SRA1004033
SRR002328.105765
283585
Betaproteobacteria
CAT
Met
>SRA1004110
SRR002328.152659
525560
Betaproteobacteria
GCC
Gly
>SRA1004015
SRR002328.97191
525560
Betaproteobacteria
GCC
Gly
>SRA1004034
SRR002328.106513
282077
Betaproteobacteria
TTG
Gln
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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