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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
44 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170550544
CXWF01000313
254188
Alphaproteobacteria
CCA
Trp
>WENV170550551
CXWF01000572
147334
Alphaproteobacteria
CAT
Met
>WENV170550552
CXWF01000572
338282
Alphaproteobacteria
GTT
Asn
>WENV170550565
CXWF01001137
316120
Alphaproteobacteria
TGC
Ala
>WENV170550572
CXWF01001316
59164
Alphaproteobacteria
GAG
Leu
>WENV170550639
CXWF01006582
148200
Alphaproteobacteria
TGG
Pro
>WENV170550641
CXWF01006593
23671
Alphaproteobacteria
CGA
Ser
>WENV170550648
CXWF01008287
147085
Alphaproteobacteria
CCG
Arg
>WENV170550651
CXWF01008885
80917
Alphaproteobacteria
CAG
Leu
>WENV170550660
CXWF01010228
23672
Alphaproteobacteria
GCT
Ser
>WENV170550674
CXWF01011871
191695
Alphaproteobacteria
CCT
Arg
>WENV170550684
CXWF01013297
95928
Alphaproteobacteria
TAG
Leu
>WENV170550688
CXWF01013845
199865
Alphaproteobacteria
CAT
Met
>WENV170550693
CXWF01014865
340288
Alphaproteobacteria
GCC
Gly
>WENV170550700
CXWF01015148
162801
Alphaproteobacteria
GTG
His
>WENV170550770
CXWF01024381
162262
Alphaproteobacteria
GAC
Val
>WENV170550776
CXWF01025094
284043
Alphaproteobacteria
CGT
Thr
>WENV170550778
CXWF01025098
237740
Alphaproteobacteria
TTT
Lys
>WENV170550780
CXWF01025100
148265
Alphaproteobacteria
CCT
Arg
>WENV170550787
CXWF01026816
339846
Alphaproteobacteria
GAC
Val
>WENV170550793
CXWF01028002
369678
Alphaproteobacteria
GGT
Thr
>WENV170550817
CXWF01033131
319925
Alphaproteobacteria
TGT
Thr
>WENV170550834
CXWF01035673
339724
Alphaproteobacteria
TTG
Gln
>WENV170550844
CXWF01036544
99726
Alphaproteobacteria
TAG
Leu
>WENV170550845
CXWF01036839
381459
Alphaproteobacteria
CAC
Val
>WENV170550847
CXWF01036839
176908
Alphaproteobacteria
GTC
Asp
>WENV170550865
CXWF01040964
163860
Alphaproteobacteria
GGG
Pro
>WENV170550871
CXWF01041886
10665
Alphaproteobacteria
GCT
Ser
>WENV170550872
CXWF01042311
352191
Alphaproteobacteria
GGT
Thr
>WENV170550875
CXWF01042536
147289
Alphaproteobacteria
GTC
Asp
>WENV170550901
CXWF01046648
303842
Alphaproteobacteria
TAC
Val
>WENV170550919
CXWF01049364
237493
Alphaproteobacteria
CCA
Trp
>WENV170550935
CXWF01051859
339606
Alphaproteobacteria
>WENV170550950
CXWF01054945
59164
Alphaproteobacteria
GAG
Leu
>WENV170550956
CXWF01055947
377327
Alphaproteobacteria
GCC
Gly
>WENV170550962
CXWF01056932
338282
Alphaproteobacteria
GTT
Asn
>WENV170550969
CXWF01058390
339725
Alphaproteobacteria
GAA
Phe
>WENV170550985
CXWF01062468
338760
Alphaproteobacteria
GAA
Phe
>WENV170550986
CXWF01062526
21074
Alphaproteobacteria
GGA
Ser
>WENV170550994
CXWF01062926
114627
Alphaproteobacteria
>WENV170551029
CXWF01074045
147083
Alphaproteobacteria
GGG
Pro
>WENV170551048
CXWF01085809
412281
Alphaproteobacteria
CTG
Gln
>WENV170551049
CXWF01085825
80918
Alphaproteobacteria
GAG
Leu
>WENV170551050
CXWF01085974
421153
Alphaproteobacteria
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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