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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
163 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1006427
SRR020488.83985
96363
Cyanobacteriota
TAG
Leu
>SRA1006502
SRR020488.110681
96363
Cyanobacteriota
TAG
Leu
>SRA1006680
SRR020488.174553
96363
Cyanobacteriota
TAG
Leu
>SRA1006683
SRR020488.175988
96363
Cyanobacteriota
TAG
Leu
>SRA1006778
SRR020488.205653
96363
Cyanobacteriota
TAG
Leu
>SRA1006819
SRR020488.219617
96363
Cyanobacteriota
TAG
Leu
>SRA1006861
SRR020488.238755
96363
Cyanobacteriota
TAG
Leu
>SRA1007110
SRR020488.339129
96363
Cyanobacteriota
TAG
Leu
>SRA1007252
SRR020488.388405
96363
Cyanobacteriota
TAG
Leu
>SRA1007313
SRR020488.406793
96363
Cyanobacteriota
TAG
Leu
>SRA1007434
SRR020488.449034
96363
Cyanobacteriota
TAG
Leu
>SRA1006294
SRR020488.33952
252089
Cyanobacteriota
GTG
His
>SRA1006418
SRR020488.80368
252089
Cyanobacteriota
GTG
His
>SRA1006509
SRR020488.113508
252089
Cyanobacteriota
GTG
His
>SRA1006521
SRR020488.120628
252089
Cyanobacteriota
GTG
His
>SRA1006559
SRR020488.132670
252089
Cyanobacteriota
GTG
His
>SRA1006614
SRR020488.152754
252089
Cyanobacteriota
GTG
His
>SRA1006654
SRR020488.168940
252089
Cyanobacteriota
GTG
His
>SRA1006690
SRR020488.178585
252089
Cyanobacteriota
GTG
His
>SRA1006705
SRR020488.183062
252089
Cyanobacteriota
GTG
His
>SRA1007167
SRR020488.361662
252089
Cyanobacteriota
GTG
His
>SRA1007391
SRR020488.431236
252089
Cyanobacteriota
GTG
His
>SRA1007456
SRR020488.459889
252089
Cyanobacteriota
GTG
His
>SRA1006325
SRR020488.47372
144929
Cyanobacteriota
CAT
Met
>SRA1007184
SRR020488.366586
144929
Cyanobacteriota
CAT
Met
>SRA1007326
SRR020488.411144
11030
Cyanobacteriota
GCT
Ser
>SRA1007192
SRR020488.371168
11030
Cyanobacteriota
GCT
Ser
>SRA1007076
SRR020488.324889
11030
Cyanobacteriota
GCT
Ser
>SRA1006894
SRR020488.255779
11030
Cyanobacteriota
GCT
Ser
>SRA1006874
SRR020488.244688
11030
Cyanobacteriota
GCT
Ser
>SRA1006813
SRR020488.217634
11030
Cyanobacteriota
GCT
Ser
>SRA1006249
SRR020488.15566
11030
Cyanobacteriota
GCT
Ser
>SRA1006263
SRR020488.21679
11030
Cyanobacteriota
GCT
Ser
>SRA1006309
SRR020488.39713
11030
Cyanobacteriota
GCT
Ser
>SRA1006322
SRR020488.45851
11030
Cyanobacteriota
GCT
Ser
>SRA1006326
SRR020488.48282
11030
Cyanobacteriota
GCT
Ser
>SRA1006345
SRR020488.53836
11030
Cyanobacteriota
GCT
Ser
>SRA1006382
SRR020488.69118
11030
Cyanobacteriota
GCT
Ser
>SRA1006443
SRR020488.89731
11030
Cyanobacteriota
GCT
Ser
>SRA1006474
SRR020488.101410
11030
Cyanobacteriota
GCT
Ser
>SRA1006475
SRR020488.101543
11030
Cyanobacteriota
GCT
Ser
>SRA1006506
SRR020488.112836
11030
Cyanobacteriota
GCT
Ser
>SRA1006545
SRR020488.128241
11030
Cyanobacteriota
GCT
Ser
>SRA1006647
SRR020488.165806
11030
Cyanobacteriota
GCT
Ser
>SRA1006410
SRR020488.77968
147238
Cyanobacteriota
CCG
Arg
>SRA1006637
SRR020488.160057
147238
Cyanobacteriota
CCG
Arg
>SRA1006884
SRR020488.252110
147238
Cyanobacteriota
CCG
Arg
>SRA1007179
SRR020488.363824
147238
Cyanobacteriota
CCG
Arg
>SRA1006480
SRR020488.102910
149253
Cyanobacteriota
ACG
Arg
>SRA1006499
SRR020488.110198
149253
Cyanobacteriota
ACG
Arg
>SRA1006543
SRR020488.128072
149253
Cyanobacteriota
ACG
Arg
>SRA1006581
SRR020488.140972
149253
Cyanobacteriota
ACG
Arg
>SRA1006940
SRR020488.272561
149253
Cyanobacteriota
ACG
Arg
>SRA1007023
SRR020488.302254
149253
Cyanobacteriota
ACG
Arg
>SRA1007053
SRR020488.310451
149253
Cyanobacteriota
ACG
Arg
>SRA1007140
SRR020488.349436
149253
Cyanobacteriota
ACG
Arg
>SRA1007168
SRR020488.361870
149253
Cyanobacteriota
ACG
Arg
>SRA1007197
SRR020488.372684
149253
Cyanobacteriota
ACG
Arg
>SRA1007334
SRR020488.414094
149253
Cyanobacteriota
ACG
Arg
>SRA1006232
SRR020488.5766
341034
Cyanobacteriota
GGT
Thr
>SRA1006241
SRR020488.9305
341034
Cyanobacteriota
GGT
Thr
>SRA1006402
SRR020488.75524
341034
Cyanobacteriota
GGT
Thr
>SRA1006711
SRR020488.185129
341034
Cyanobacteriota
GGT
Thr
>SRA1007039
SRR020488.307905
341034
Cyanobacteriota
GGT
Thr
>SRA1007130
SRR020488.345951
341034
Cyanobacteriota
GGT
Thr
>SRA1007221
SRR020488.379637
341034
Cyanobacteriota
GGT
Thr
>SRA1007341
SRR020488.416724
341034
Cyanobacteriota
GGT
Thr
>SRA1007366
SRR020488.422719
341034
Cyanobacteriota
GGT
Thr
>SRA1007381
SRR020488.428312
341034
Cyanobacteriota
GGT
Thr
>SRA1007444
SRR020488.454701
341034
Cyanobacteriota
GGT
Thr
>SRA1006290
SRR020488.32721
145761
Cyanobacteriota
GTC
Asp
>SRA1006498
SRR020488.109826
145761
Cyanobacteriota
GTC
Asp
>SRA1006533
SRR020488.124482
145761
Cyanobacteriota
GTC
Asp
>SRA1006586
SRR020488.142692
145761
Cyanobacteriota
GTC
Asp
>SRA1006627
SRR020488.155970
145761
Cyanobacteriota
GTC
Asp
>SRA1006729
SRR020488.189468
145761
Cyanobacteriota
GTC
Asp
>SRA1006902
SRR020488.257296
145761
Cyanobacteriota
GTC
Asp
>SRA1006993
SRR020488.289911
145761
Cyanobacteriota
GTC
Asp
>SRA1007293
SRR020488.401060
145761
Cyanobacteriota
GTC
Asp
>SRA1007397
SRR020488.434276
145761
Cyanobacteriota
GTC
Asp
>SRA1007460
SRR020488.462641
145761
Cyanobacteriota
GTC
Asp
>SRA1007403
SRR020488.437052
411836
Cyanobacteriota
TCC
Gly
>SRA1007367
SRR020488.422819
411836
Cyanobacteriota
TCC
Gly
>SRA1007300
SRR020488.404001
411836
Cyanobacteriota
TCC
Gly
>SRA1007145
SRR020488.352406
411836
Cyanobacteriota
TCC
Gly
>SRA1006296
SRR020488.34472
411836
Cyanobacteriota
TCC
Gly
>SRA1006310
SRR020488.39952
411836
Cyanobacteriota
TCC
Gly
>SRA1006377
SRR020488.67240
411836
Cyanobacteriota
TCC
Gly
>SRA1006572
SRR020488.136160
411836
Cyanobacteriota
TCC
Gly
>SRA1006709
SRR020488.185053
411836
Cyanobacteriota
TCC
Gly
>SRA1006712
SRR020488.185544
411836
Cyanobacteriota
TCC
Gly
>SRA1006820
SRR020488.219845
411836
Cyanobacteriota
TCC
Gly
>SRA1006856
SRR020488.237410
411836
Cyanobacteriota
TCC
Gly
>SRA1006891
SRR020488.254742
411836
Cyanobacteriota
TCC
Gly
>SRA1006994
SRR020488.290404
411836
Cyanobacteriota
TCC
Gly
>SRA1007106
SRR020488.336279
411836
Cyanobacteriota
TCC
Gly
>SRA1007129
SRR020488.345830
411836
Cyanobacteriota
TCC
Gly
>SRA1006405
SRR020488.77068
240100
Cyanobacteriota
CAT
Met
>SRA1006615
SRR020488.153055
240100
Cyanobacteriota
CAT
Met
>SRA1006979
SRR020488.285039
240100
Cyanobacteriota
CAT
Met
>SRA1006469
SRR020488.99012
95762
Cyanobacteriota
AAG
Leu
>SRA1006771
SRR020488.202742
95762
Cyanobacteriota
AAG
Leu
>SRA1006774
SRR020488.204212
95762
Cyanobacteriota
AAG
Leu
>SRA1006801
SRR020488.215185
95762
Cyanobacteriota
AAG
Leu
>SRA1006845
SRR020488.229188
95762
Cyanobacteriota
AAG
Leu
>SRA1006984
SRR020488.285937
95762
Cyanobacteriota
AAG
Leu
>SRA1007127
SRR020488.345073
95762
Cyanobacteriota
AAG
Leu
>SRA1007152
SRR020488.355932
95762
Cyanobacteriota
AAG
Leu
>SRA1007180
SRR020488.364155
95762
Cyanobacteriota
AAG
Leu
>SRA1006374
SRR020488.66494
162346
Cyanobacteriota
GGG
Pro
>SRA1007024
SRR020488.302560
162346
Cyanobacteriota
GGG
Pro
>SRA1007074
SRR020488.322605
162346
Cyanobacteriota
GGG
Pro
>SRA1007245
SRR020488.385859
162346
Cyanobacteriota
GGG
Pro
>SRA1007274
SRR020488.395646
162346
Cyanobacteriota
GGG
Pro
>SRA1007287
SRR020488.399020
162346
Cyanobacteriota
GGG
Pro
>SRA1007383
SRR020488.428364
162346
Cyanobacteriota
GGG
Pro
>SRA1007437
SRR020488.451366
162346
Cyanobacteriota
GGG
Pro
>SRA1006265
SRR020488.22425
237899
Cyanobacteriota
CCA
Trp
>SRA1006336
SRR020488.51953
237899
Cyanobacteriota
CCA
Trp
>SRA1006463
SRR020488.96792
237899
Cyanobacteriota
CCA
Trp
>SRA1006663
SRR020488.170221
237899
Cyanobacteriota
CCA
Trp
>SRA1006897
SRR020488.256607
237899
Cyanobacteriota
CCA
Trp
>SRA1007078
SRR020488.325709
237899
Cyanobacteriota
CCA
Trp
>SRA1007348
SRR020488.417715
237899
Cyanobacteriota
CCA
Trp
>SRA1006413
SRR020488.79492
37357
Cyanobacteriota
TAA
Leu
>SRA1006594
SRR020488.146764
37357
Cyanobacteriota
TAA
Leu
>SRA1006638
SRR020488.161299
37357
Cyanobacteriota
TAA
Leu
>SRA1007410
SRR020488.438678
37357
Cyanobacteriota
TAA
Leu
>SRA1007441
SRR020488.452657
37357
Cyanobacteriota
TAA
Leu
>SRA1006274
SRR020488.24564
145893
Cyanobacteriota
CAT
Met
>SRA1006302
SRR020488.35818
145893
Cyanobacteriota
CAT
Met
>SRA1006306
SRR020488.38771
145893
Cyanobacteriota
CAT
Met
>SRA1006344
SRR020488.53726
145893
Cyanobacteriota
CAT
Met
>SRA1006393
SRR020488.72569
145893
Cyanobacteriota
CAT
Met
>SRA1006468
SRR020488.98796
145893
Cyanobacteriota
CAT
Met
>SRA1006772
SRR020488.202921
145893
Cyanobacteriota
CAT
Met
>SRA1006785
SRR020488.208005
145893
Cyanobacteriota
CAT
Met
>SRA1006862
SRR020488.238976
145893
Cyanobacteriota
CAT
Met
>SRA1007153
SRR020488.356548
145893
Cyanobacteriota
CAT
Met
>SRA1007165
SRR020488.361521
145893
Cyanobacteriota
CAT
Met
>SRA1007338
SRR020488.415492
145893
Cyanobacteriota
CAT
Met
>SRA1006445
SRR020488.90859
23971
Cyanobacteriota
TGA
Ser
>SRA1006817
SRR020488.219342
23971
Cyanobacteriota
TGA
Ser
>SRA1007073
SRR020488.322353
23971
Cyanobacteriota
TGA
Ser
>SRA1007101
SRR020488.334117
23971
Cyanobacteriota
TGA
Ser
>SRA1007121
SRR020488.341933
23971
Cyanobacteriota
TGA
Ser
>SRA1007423
SRR020488.443857
23971
Cyanobacteriota
TGA
Ser
>SRA1006732
SRR020488.190029
149623
Cyanobacteriota
GAT
Ile
>SRA1006244
SRR020488.10975
338782
Cyanobacteriota
GTT
Asn
>SRA1006332
SRR020488.50302
338782
Cyanobacteriota
GTT
Asn
>SRA1006542
SRR020488.128064
338782
Cyanobacteriota
GTT
Asn
>SRA1006775
SRR020488.204707
338782
Cyanobacteriota
GTT
Asn
>SRA1006829
SRR020488.222320
338782
Cyanobacteriota
GTT
Asn
>SRA1006854
SRR020488.236567
338782
Cyanobacteriota
GTT
Asn
>SRA1006877
SRR020488.245827
338782
Cyanobacteriota
GTT
Asn
>SRA1006892
SRR020488.255120
338782
Cyanobacteriota
GTT
Asn
>SRA1007022
SRR020488.302135
338782
Cyanobacteriota
GTT
Asn
>SRA1007075
SRR020488.324117
338782
Cyanobacteriota
GTT
Asn
>SRA1007232
SRR020488.382743
338782
Cyanobacteriota
GTT
Asn
>SRA1007398
SRR020488.434653
338782
Cyanobacteriota
GTT
Asn
>SRA1007442
SRR020488.453947
338782
Cyanobacteriota
GTT
Asn
>SRA1006944
SRR020488.273709
237009
Cyanobacteriota
GGC
Ala
>SRA1006952
SRR020488.278659
237009
Cyanobacteriota
GGC
Ala
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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