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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
19 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1015909
SRR023846.254414
163880
Actinomycetota
CGG
Pro
>SRA1015990
SRR023846.295660
163880
Actinomycetota
CGG
Pro
>SRA1016118
SRR023846.354320
163880
Actinomycetota
CGG
Pro
>SRA1016552
SRR023846.560909
163880
Actinomycetota
CGG
Pro
>SRA1016163
SRR023846.376186
339308
Actinomycetota
CTG
Gln
>SRA1016464
SRR023846.511820
193566
Actinomycetota
GAT
Ile
>SRA1015886
SRR023846.241940
237876
Actinomycetota
GTT
Asn
>SRA1015821
SRR023846.211984
102746
Actinomycetota
GTA
Tyr
>SRA1016460
SRR023846.508799
254531
Actinomycetota
>SRA1015811
SRR023846.208315
237559
Actinomycetota
GTG
His
>SRA1016456
SRR023846.507340
237559
Actinomycetota
GTG
His
>SRA1015395
SRR023846.42063
245899
Actinomycetota
ACG
Arg
>SRA1015834
SRR023846.218497
245899
Actinomycetota
ACG
Arg
>SRA1015938
SRR023846.274176
183544
Actinomycetota
CAT
Met
>SRA1015421
SRR023846.51608
278124
Actinomycetota
CTT
Lys
>SRA1016045
SRR023846.322849
278124
Actinomycetota
CTT
Lys
>SRA1016500
SRR023846.533581
278124
Actinomycetota
CTT
Lys
>SRA1015320
SRR023846.15388
339318
Actinomycetota
CAC
Val
>SRA1016342
SRR023846.459416
240825
Actinomycetota
GTG
His
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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