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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
72 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1046818
SRR035093.392789
340609
Actinomycetota
GCC
Gly
>SRA1045880
SRR035093.188248
45128
Actinomycetota
GGA
Ser
>SRA1045972
SRR035093.207716
45128
Actinomycetota
GGA
Ser
>SRA1046451
SRR035093.309425
45128
Actinomycetota
GGA
Ser
>SRA1046744
SRR035093.374791
235615
Actinomycetota
TGC
Ala
>SRA1045198
SRR035093.26447
127865
Actinomycetota
GAT
Ile
>SRA1045544
SRR035093.117295
127865
Actinomycetota
GAT
Ile
>SRA1047089
SRR035093.452836
127865
Actinomycetota
GAT
Ile
>SRA1045288
SRR035093.58634
153188
Actinomycetota
CAT
Met
>SRA1047137
SRR035093.463829
153188
Actinomycetota
CAT
Met
>SRA1045682
SRR035093.148167
343168
Actinomycetota
CCG
Arg
>SRA1047538
SRR035093.571164
343168
Actinomycetota
CCG
Arg
>SRA1045661
SRR035093.142776
248046
Actinomycetota
CCA
Trp
>SRA1046493
SRR035093.319487
248046
Actinomycetota
CCA
Trp
>SRA1046591
SRR035093.338955
248046
Actinomycetota
CCA
Trp
>SRA1045380
SRR035093.81188
158373
Actinomycetota
GGG
Pro
>SRA1045725
SRR035093.157225
158373
Actinomycetota
GGG
Pro
>SRA1046001
SRR035093.214624
158373
Actinomycetota
GGG
Pro
>SRA1046406
SRR035093.300845
158373
Actinomycetota
GGG
Pro
>SRA1047072
SRR035093.449177
158373
Actinomycetota
GGG
Pro
>SRA1047429
SRR035093.536386
158373
Actinomycetota
GGG
Pro
>SRA1045629
SRR035093.137275
339308
Actinomycetota
CTG
Gln
>SRA1046319
SRR035093.278528
339308
Actinomycetota
CTG
Gln
>SRA1046828
SRR035093.394459
339308
Actinomycetota
CTG
Gln
>SRA1047148
SRR035093.468827
339308
Actinomycetota
CTG
Gln
>SRA1047247
SRR035093.494448
339308
Actinomycetota
CTG
Gln
>SRA1046975
SRR035093.428870
236241
Actinomycetota
TAC
Val
>SRA1045525
SRR035093.111870
148209
Actinomycetota
CGG
Pro
>SRA1046048
SRR035093.223533
148209
Actinomycetota
CGG
Pro
>SRA1046248
SRR035093.261995
148209
Actinomycetota
CGG
Pro
>SRA1046258
SRR035093.264257
237553
Actinomycetota
ACG
Arg
>SRA1045311
SRR035093.64614
344380
Actinomycetota
GAC
Val
>SRA1045929
SRR035093.201241
344380
Actinomycetota
GAC
Val
>SRA1046271
SRR035093.268095
344380
Actinomycetota
GAC
Val
>SRA1046385
SRR035093.294075
344380
Actinomycetota
GAC
Val
>SRA1046779
SRR035093.382624
344380
Actinomycetota
GAC
Val
>SRA1046914
SRR035093.417924
344380
Actinomycetota
GAC
Val
>SRA1046983
SRR035093.429557
344380
Actinomycetota
GAC
Val
>SRA1047506
SRR035093.560469
344380
Actinomycetota
GAC
Val
>SRA1046568
SRR035093.334951
255588
Actinomycetota
CCG
Arg
>SRA1045484
SRR035093.104399
255588
Actinomycetota
CCG
Arg
>SRA1045966
SRR035093.206788
245899
Actinomycetota
ACG
Arg
>SRA1046308
SRR035093.275523
245899
Actinomycetota
ACG
Arg
>SRA1046490
SRR035093.319164
245899
Actinomycetota
ACG
Arg
>SRA1046661
SRR035093.355002
245899
Actinomycetota
ACG
Arg
>SRA1045927
SRR035093.201241
344531
Actinomycetota
GCC
Gly
>SRA1046132
SRR035093.242475
344531
Actinomycetota
GCC
Gly
>SRA1046235
SRR035093.259237
344531
Actinomycetota
GCC
Gly
>SRA1046981
SRR035093.429557
344531
Actinomycetota
GCC
Gly
>SRA1047505
SRR035093.560469
344531
Actinomycetota
GCC
Gly
>SRA1047592
SRR035093.594172
344531
Actinomycetota
GCC
Gly
>SRA1045315
SRR035093.65485
338763
Actinomycetota
GCC
Gly
>SRA1045471
SRR035093.101230
338763
Actinomycetota
GCC
Gly
>SRA1045602
SRR035093.132481
338763
Actinomycetota
GCC
Gly
>SRA1045640
SRR035093.139566
338763
Actinomycetota
GCC
Gly
>SRA1047063
SRR035093.446309
158275
Actinomycetota
GTC
Asp
>SRA1046285
SRR035093.271116
145239
Actinomycetota
CAT
Met
>SRA1046730
SRR035093.372392
145239
Actinomycetota
CAT
Met
>SRA1045310
SRR035093.64614
413961
Actinomycetota
GCA
Cys
>SRA1045928
SRR035093.201241
413961
Actinomycetota
GCA
Cys
>SRA1046204
SRR035093.253153
413961
Actinomycetota
GCA
Cys
>SRA1046270
SRR035093.268095
413961
Actinomycetota
GCA
Cys
>SRA1046384
SRR035093.294075
413961
Actinomycetota
GCA
Cys
>SRA1046778
SRR035093.382624
413961
Actinomycetota
GCA
Cys
>SRA1046819
SRR035093.392789
413961
Actinomycetota
GCA
Cys
>SRA1046834
SRR035093.395679
413961
Actinomycetota
GCA
Cys
>SRA1046982
SRR035093.429557
413961
Actinomycetota
GCA
Cys
>SRA1046169
SRR035093.249644
344394
Actinomycetota
CTG
Gln
>SRA1046811
SRR035093.390485
344394
Actinomycetota
CTG
Gln
>SRA1047067
SRR035093.447213
344394
Actinomycetota
CTG
Gln
>SRA1047511
SRR035093.561732
344394
Actinomycetota
CTG
Gln
>SRA1046685
SRR035093.359943
152456
Actinomycetota
CAT
Met
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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