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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV182579064
OJGS01000108
180052
Gammaproteobacteria
CCT
Arg
>WENV182579573
OJGS01025306
196766
Gammaproteobacteria
GTT
Asn
>WENV182579357
OJGS01006446
297858
Gammaproteobacteria
TGC
Ala
>WENV182579152
OJGS01001165
180053
Gammaproteobacteria
CAT
Met
>WENV182579284
OJGS01004229
180053
Gammaproteobacteria
CAT
Met
>WENV182579235
OJGS01002884
178175
Gammaproteobacteria
ACG
Arg
>WENV182579238
OJGS01002915
218635
Gammaproteobacteria
GAC
Val
>WENV182579200
OJGS01002116
140925
Gammaproteobacteria
GTA
Tyr
>WENV182579329
OJGS01005683
197551
Gammaproteobacteria
TCT
Arg
>WENV182579223
OJGS01002566
229289
Gammaproteobacteria
TGG
Pro
>WENV182579130
OJGS01000806
229289
Gammaproteobacteria
TGG
Pro
>WENV182579455
OJGS01011235
281282
Gammaproteobacteria
TTC
Glu
>WENV182579346
OJGS01006170
297790
Gammaproteobacteria
TGC
Ala
>WENV182579403
OJGS01008281
292006
Gammaproteobacteria
TGC
Ala
>WENV182579446
OJGS01010408
76195
Gammaproteobacteria
CAA
Leu
>WENV182579100
OJGS01000388
280812
Gammaproteobacteria
GAA
Phe
>WENV182579522
OJGS01017305
118206
Gammaproteobacteria
TAG
Leu
>WENV182579646
OJGS01039309
176062
Gammaproteobacteria
CAT
Met
>WENV182579231
OJGS01002787
176545
Gammaproteobacteria
CAT
Met
>WENV182579477
OJGS01012927
401684
Gammaproteobacteria
CCT
Arg
>WENV182579289
OJGS01004439
302111
Gammaproteobacteria
GTT
Asn
>WENV182579500
OJGS01015194
177028
Gammaproteobacteria
CAT
Met
>WENV182579579
OJGS01026760
180680
Gammaproteobacteria
GAC
Val
>WENV182579402
OJGS01008281
176301
Gammaproteobacteria
GAT
Ile
>WENV182579285
OJGS01004354
317792
Gammaproteobacteria
TGC
Ala
>WENV182579054
OJGS01000079
56623
Gammaproteobacteria
GGA
Ser
>WENV182579039
OJGS01000052
56623
Gammaproteobacteria
GGA
Ser
>WENV182579339
OJGS01005957
285547
Gammaproteobacteria
TTG
Gln
>WENV182579523
OJGS01017305
180681
Gammaproteobacteria
TGG
Pro
>WENV182579178
OJGS01001662
14091
Gammaproteobacteria
TGA
Ser
>WENV182579463
OJGS01012042
179710
Gammaproteobacteria
GAC
Val
>WENV182579301
OJGS01004881
76206
Gammaproteobacteria
TAA
Leu
>WENV182579117
OJGS01000661
401830
Gammaproteobacteria
TTG
Gln
>WENV182579199
OJGS01002116
282902
Gammaproteobacteria
TGT
Thr
>WENV182579250
OJGS01003049
282893
Gammaproteobacteria
TAC
Val
>WENV182579485
OJGS01013653
180679
Gammaproteobacteria
CCA
Trp
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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