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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
Identical Sequence Group
metagenomic water samples (SRP000427)
[ 100 % ]
Number of tRNA clusters
T
C
A
G
T
phe
AAA
0
Ser
AGA
0
Tyr
ATA
0
Cys
ACA
0
T
GAA
17
GGA
9
GTA
11
GCA
13
C
Leu
TAA
26
TGA
20
ochre
TTA
0
opal Sec
TCA
2
A
CAA
9
CGA
5
amber
CTA
1
Trp
CCA
10
G
C
Leu
AAG
0
Pro
AGG
0
His
ATG
0
Arg
ACG
9
T
GAG
8
GGG
8
GTG
8
GCG
1
C
TAG
10
TGG
16
Gln
TTG
14
TCG
5
A
CAG
9
CGG
2
CTG
4
CCG
6
G
A
Ile
AAT
0
Thr
AGT
0
Asn
ATT
0
Ser
ACT
1
T
GAT
20
GGT
13
GTT
23
GCT
9
C
TAT
7
TGT
24
Lys
TTT
20
Arg
TCT
21
A
Met
CAT
37
CGT
3
CTT
4
CCT
8
G
G
Val
AAC
0
Ala
AGC
0
Asp
ATC
0
Gly
ACC
1
T
GAC
11
GGC
6
GTC
22
GCC
12
C
TAC
17
TGC
20
Glu
TTC
17
TCC
14
A
CAC
3
CGC
1
CTC
1
CCC
5
G
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