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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10694 (73 seq.)
>W1710787528
LJJR01000013
Deinococcota
Thermus scotoductus [LJJR]
56006
56098
+
Ser
CGA
[ENA]
¡û
>W131155589
AQOS01000001
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
2055
2147
+
Ser
CGA
[ENA]
¡û
>W131160734
AQWU01000067
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
19454
19362
-
Ser
CGA
[ENA]
¡û
>W131177921
ARLD01000087
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
31936
31844
-
Ser
CGA
[ENA]
¡û
>W131218098
ATXJ01000005
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
83203
83111
-
Ser
CGA
[ENA]
¡û
>W131231964
AUIW01000012
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
33227
33319
+
Ser
CGA
[ENA]
¡û
>C171047231
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
638671
638579
-
Ser
CGA
-
¡û
>W131167509
ARDI01000003
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
141963
142054
+
Ser
CGA
[ENA]
¡û
>C025881
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
1145622
1145713
+
Ser
CGA
[Ensembl]
¡û
>C025935
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
1470926
1471017
+
Ser
CGA
[Ensembl]
¡û
>WENV180013608
FMSI01113325
[FMSI] soil metagenome; Soil
92
1
-
Ser
CGA
[ENA]
¢þ
>WENV180014208
FPIC01097271
[FPIC] soil metagenome; Soil
92
1
-
Ser
CGA
[ENA]
¢þ
>WENV180015495
FQKF010754765
[FQKF] soil metagenome; Soil
11
103
+
Ser
CGA
[ENA]
¢þ
>W141080518
ATNI01000070
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
8161
8069
-
Ser
CGA
[ENA]
¡û
>WENV181227929
OFDN01080246
[OFDN] hot springs metagenome; Water
627
719
+
Ser
CGA
[ENA]
¢þ
>WENV181404842
OGCB01000634
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
6187
6095
-
Ser
CGA
[ENA]
¢þ
>WENV181405371
OGCE01000044
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
37068
37160
+
Ser
CGA
[ENA]
¢þ
>WENV181408315
OGCH01001715
[OGCH] hot springs metagenome; hot springs
4888
4980
+
Ser
CGA
[ENA]
¢þ
>W08011560
ABVK01000001
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
84653
84745
+
Ser
CGA
[ENA]
¡û
>WENV170700744
LJSS01000555
[LJSS] hot springs metagenome; water from Lobios Hot Spring
1312
1404
+
Ser
CGA
[ENA]
¢þ
>C181003575
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
1680291
1680199
-
Ser
CGA
-
¡û
>C191159688
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
1210038
1209946
-
Ser
CGA
-
¡û
>C191190037
LR027517
Deinococcota
Thermus thermophilus [LR027517]
73866
73774
-
Ser
CGA
-
¡û
>W141818269
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
1224383
1224291
-
Ser
CGA
[ENA]
¡û
>W141818285
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
1026943
1027035
+
Ser
CGA
[ENA]
¡û
>W141820369
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
1535512
1535420
-
Ser
CGA
[ENA]
¡û
>W141820767
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
1179418
1179326
-
Ser
CGA
[ENA]
¡û
>W1911578800
PELL01000241
Deinococcota
Thermus scotoductus 39_S39 [PELL]
122
30
-
Ser
CGA
[ENA]
¡û
>W1911578888
PELN01000101
Deinococcota
Thermus scotoductus 37_S37 [PELN]
3087
2995
-
Ser
CGA
[ENA]
¡û
>W1911578944
PELO01000258
Deinococcota
Thermus scotoductus 35_S35 [PELO]
120
28
-
Ser
CGA
[ENA]
¡û
>W1911578974
PELP01000070
Deinococcota
Thermus scotoductus 34_S34 [PELP]
4565
4657
+
Ser
CGA
[ENA]
¡û
>W1911579059
PELQ01000345
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
314
406
+
Ser
CGA
[ENA]
¡û
>W1911579092
PELR01000280
Deinococcota
Thermus scotoductus 32_S32 [PELR]
170
78
-
Ser
CGA
[ENA]
¡û
>W1911579131
PELS01000203
Deinococcota
Thermus scotoductus 31_S31 [PELS]
295
203
-
Ser
CGA
[ENA]
¡û
>W1911579191
PELT01000248
Deinococcota
Thermus scotoductus 30_S30 [PELT]
323
415
+
Ser
CGA
[ENA]
¡û
>W1911579241
PELU01000387
Deinococcota
Thermus scotoductus 29_S29 [PELU]
314
406
+
Ser
CGA
[ENA]
¡û
>W1911579288
PELV01000312
Deinococcota
Thermus scotoductus 28_S28 [PELV]
193
101
-
Ser
CGA
[ENA]
¡û
>W1911579338
PELW01000332
Deinococcota
Thermus scotoductus 27_S27 [PELW]
132
40
-
Ser
CGA
[ENA]
¡û
>W1911579379
PELX01000225
Deinococcota
Thermus scotoductus 26_S26 [PELX]
132
40
-
Ser
CGA
[ENA]
¡û
>W1911579614
PEMC01000239
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
132
40
-
Ser
CGA
[ENA]
¡û
>W1911579663
PEMD01000248
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
296
388
+
Ser
CGA
[ENA]
¡û
>W1911579700
PEME01000116
Deinococcota
Thermus scotoductus 19_S19 [PEME]
132
40
-
Ser
CGA
[ENA]
¡û
>W1911579757
PEMF01000208
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
1013
921
-
Ser
CGA
[ENA]
¡û
>W1911579860
PEMH01000295
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
324
416
+
Ser
CGA
[ENA]
¡û
>W1911579884
PEMI01000094
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
319
411
+
Ser
CGA
[ENA]
¡û
>W1911579956
PEMJ01000323
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
314
406
+
Ser
CGA
[ENA]
¡û
>W1911580035
PEML01000217
Deinococcota
Thermus scotoductus 12_S12 [PEML]
120
28
-
Ser
CGA
[ENA]
¡û
>W1911580089
PEMM01000195
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
323
415
+
Ser
CGA
[ENA]
¡û
>W1911580140
PEMN01000208
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
974
882
-
Ser
CGA
[ENA]
¡û
>W1911580174
PEMO01000109
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
193
285
+
Ser
CGA
[ENA]
¡û
>W1911580239
PEMP01000336
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
285
193
-
Ser
CGA
[ENA]
¡û
>W1911580288
PEMQ01000266
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
14596
14504
-
Ser
CGA
[ENA]
¡û
>W1911580376
PEMS01000315
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
130
38
-
Ser
CGA
[ENA]
¡û
>W1911580428
PEMT01000229
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
136
44
-
Ser
CGA
[ENA]
¡û
>W1911580475
PEMU01000211
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
148
56
-
Ser
CGA
[ENA]
¡û
>W1911580539
PEMV01000338
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
8094
8002
-
Ser
CGA
[ENA]
¡û
>W1911580579
PEMW01000391
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
130
38
-
Ser
CGA
[ENA]
¡û
>W1810268420
PRDA01000001
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
20320
20412
+
Ser
CGA
[ENA]
¡û
>W1810605085
QGMX01000002
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
38449
38357
-
Ser
CGA
[ENA]
¡û
>W1810889162
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
1752025
1752117
+
Ser
CGA
[ENA]
¡û
>W1511401700
JTJB01000031
Deinococcota
Thermus sp. 2.9 [JTJB]
23386
23478
+
Ser
CGA
[ENA]
¡û
>C11123067
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
1848477
1848385
-
Ser
CGA
[Ensembl]
¡û
>C11123188
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
1498882
1498974
+
Ser
CGA
[Ensembl]
¡û
>C121006392
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
686814
686906
+
Ser
CGA
[Ensembl]
¡û
>C121009757
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
440153
440061
-
Ser
CGA
[Ensembl]
¡û
>C161028695
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
1664592
1664500
-
Ser
CGA
-
¡û
>C161067114
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
529366
529274
-
Ser
CGA
[Ensembl]
¡û
>W121056042
AIJQ01000015
Deinococcota
Thermus parvatiensis RL [AIJQ]
71159
71251
+
Ser
CGA
[ENA]
¡û
>W1610045429
BBBN01000573
Deinococcota
Thermus sp. JCM 17653 [BBBN]
541
633
+
Ser
CGA
[ENA]
¡û
>C131002419
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
1626129
1626038
-
Ser
CGA
[Ensembl]
¡û
>W1610651383
LJJR01000013
Deinococcota
Thermus scotoductus [LJJR]
56006
56098
+
Ser
CGA
[ENA]
¡û
>W1710042270
BBBN01000573
Deinococcota
Thermus sp. JCM 17653 [BBBN]
541
633
+
Ser
CGA
[ENA]
¡û
>W1710514642
FNBC01000006
Deinococcota
Thermus arciformis [FNBC]
51243
51151
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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