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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10842 (32 seq.)
>C171064266
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2611678
2611769
+
Ser
GCT
-
¡û
>C171064294
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2953979
2954070
+
Ser
GCT
-
¡û
>C171064333
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
702831
702740
-
Ser
GCT
-
¡û
>C171109213
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1417504
1417595
+
Ser
GCT
-
¡û
>C171109241
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1759804
1759895
+
Ser
GCT
-
¡û
>C171109275
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4095383
4095292
-
Ser
GCT
-
¡û
>C000835
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4445799
4445708
-
Ser
GCT
[Ensembl]
¡û
>C000855
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4437205
4437114
-
Ser
GCT
[Ensembl]
¡û
>w017049
AAQV01000071
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
2251
2163
-
Ser
GCT
[ENA]
¡û
>w017008
AAQV01000011
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
62739
62651
-
Ser
GCT
[ENA]
¡û
>w010449
AAKU01000209
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
1786
1879
+
Ser
GCT
[ENA]
¡û
>w010429
AAKU01000148
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
5694
5787
+
Ser
GCT
[ENA]
¡û
>WENV180037852
FVAA011865522
[FVAA] soil metagenome; Soil
97
6
-
Ser
GCT
[ENA]
¢þ
>C08000744
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2611604
2611516
-
Ser
GCT
[Ensembl]
¡û
>C08000799
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
1915589
1915501
-
Ser
GCT
[Ensembl]
¡û
>WENV170674875
LCWY01015072
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
474
383
-
Ser
GCT
[ENA]
¢þ
>WENV170674942
LCWY01027200
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
94
3
-
Ser
GCT
[ENA]
¢þ
>WENV170675218
LCWZ01017635
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
455
364
-
Ser
GCT
[ENA]
¢þ
>WENV170675259
LCWZ01021801
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
458
367
-
Ser
GCT
[ENA]
¢þ
>WENV170675417
LCWZ01067830
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
5
96
+
Ser
GCT
[ENA]
¢þ
>W1910548237
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
175478
175387
-
Ser
GCT
[ENA]
¡û
>W1910548278
FZOJ01000089
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
1089
1180
+
Ser
GCT
[ENA]
¡û
>C151057261
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1598068
1598159
+
Ser
GCT
[Ensembl]
¡û
>W1511527532
JYHU01000004
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
267229
267320
+
Ser
GCT
[ENA]
¡û
>W1710506670
FMUS01000003
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
46336
46427
+
Ser
GCT
[ENA]
¡û
>W1710506706
FMUS01000070
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
689
598
-
Ser
GCT
[ENA]
¡û
>W1710520435
FNFP01000002
Bacillota
Natronincola ferrireducens [FNFP]
541321
541230
-
Ser
GCT
[ENA]
¡û
>W1710531812
FNPV01000001
Bacillota
Tindallia californiensis [FNPV]
453831
453740
-
Ser
GCT
[ENA]
¡û
>W1710531838
FNPV01000005
Bacillota
Tindallia californiensis [FNPV]
3830
3921
+
Ser
GCT
[ENA]
¡û
>W1710553638
FOHU01000001
Bacillota
Natronincola peptidivorans [FOHU]
518418
518327
-
Ser
GCT
[ENA]
¡û
>W1710563816
FOQA01000001
Bacillota
Tindallia magadiensis [FOQA]
3924
4015
+
Ser
GCT
[ENA]
¡û
>W1710563830
FOQA01000001
Bacillota
Tindallia magadiensis [FOQA]
758696
758605
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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