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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.1100 (98 seq.)
>W131010891
AHYV01000008
Bacillota
Enterococcus avium ATCC 14025 [AHYV]
35862
35766
-
SeC(p)
TCA
[ENA]
¡û
>W131027544
AJAK01000019
Bacillota
Enterococcus malodoratus ATCC 43197 [AJAK]
173859
173955
+
SeC(p)
TCA
[ENA]
¡û
>W1711096524
LTHV01000059
Bacillota
Enterococcus sp. HMSC072H05 [LTHV]
53443
53539
+
SeC(p)
TCA
[ENA]
¡û
>W1711099556
LTKO01000165
Bacillota
Enterococcus sp. HMSC064A12 [LTKO]
10628
10532
-
SeC(p)
TCA
[ENA]
¡û
>W1711186740
LWOL01000164
Bacillota
Enterococcus sp. HMSC05C03 [LWOL]
48125
48221
+
SeC(p)
TCA
[ENA]
¡û
>W131201334
ASWA01000003
Bacillota
Enterococcus malodoratus ATCC 43197 [ASWA]
11836
11932
+
SeC(p)
TCA
[ENA]
¡û
>W131202002
ASWL01000002
Bacillota
Enterococcus avium ATCC 14025 [ASWL]
259317
259413
+
SeC(p)
TCA
[ENA]
¡û
>W131027419
AJAI01000012
Bacillota
Enterococcus hirae ATCC 9790 [AJAI]
453976
453883
-
SeC(p)
TCA
[ENA]
¡û
>W131201249
ASVZ01000001
Bacillota
Enterococcus hirae ATCC 9790 [ASVZ]
983975
984068
+
SeC(p)
TCA
[ENA]
¡û
>W1711459336
MJDN01000001
Bacillota
Enterococcus hirae [MJDN]
56226
56319
+
SeC(p)
TCA
[ENA]
¡û
>W1711459453
MJDO01000027
Bacillota
Enterococcus hirae [MJDO]
446994
446901
-
SeC(p)
TCA
[ENA]
¡û
>W1711459456
MJDP01000001
Bacillota
Enterococcus hirae [MJDP]
55782
55875
+
SeC(p)
TCA
[ENA]
¡û
>W1711459518
MJDQ01000001
Bacillota
Enterococcus hirae [MJDQ]
194130
194034
-
SeC(p)
TCA
[ENA]
¡û
>W1711459576
MJDR01000001
Bacillota
Enterococcus hirae [MJDR]
55105
55198
+
SeC(p)
TCA
[ENA]
¡û
>W1711459637
MJDS01000001
Bacillota
Enterococcus hirae [MJDS]
55782
55875
+
SeC(p)
TCA
[ENA]
¡û
>W1711459817
MJDV01000001
Bacillota
Enterococcus hirae [MJDV]
416295
416391
+
SeC(p)
TCA
[ENA]
¡û
>W1711459910
MJDW01000009
Bacillota
Enterococcus hirae [MJDW]
41687
41594
-
SeC(p)
TCA
[ENA]
¡û
>WENV180146239
OAUF01000054
[OAUF] human gut metagenome; faeces
89309
89405
+
SeC
TCA
[ENA]
¢þ
>WENV180441657
OBWW01000870
[OBWW] human gut metagenome; faeces
923
1019
+
SeC
TCA
[ENA]
¢þ
>WENV180483028
OBZH01000071
[OBZH] human gut metagenome; faeces
89327
89423
+
SeC
TCA
[ENA]
¢þ
>WENV181807177
OGSN01007245
[OGSN] human gut metagenome; fecal sample 7 from infant 8
559
656
+
SeC
TCA
[ENA]
¢þ
>WENV181811386
OGSY01001298
[OGSY] human gut metagenome; fecal sample 5 from infant 8
544
641
+
SeC
TCA
[ENA]
¢þ
>WENV182401792
OIER01017016
[OIER] human gut metagenome; human gut
123
27
-
SeC
TCA
[ENA]
¢þ
>WENV182799930
OJTY01000012
[OJTY] human gut metagenome; human gut
79939
79843
-
SeC
TCA
[ENA]
¢þ
>WENV182800575
OJUF01000005
[OJUF] human gut metagenome; human gut
39857
39953
+
SeC
TCA
[ENA]
¢þ
>WENV182803549
OJUL01005118
[OJUL] human gut metagenome; human gut
69
165
+
SeC
TCA
[ENA]
¢þ
>WENV182807579
OJVY01000014
[OJVY] human gut metagenome; human gut
41929
42025
+
SeC
TCA
[ENA]
¢þ
>WENV182807803
OJVZ01004615
[OJVZ] human gut metagenome; human gut
234
138
-
SeC
TCA
[ENA]
¢þ
>WENV182812318
OJXS01000120
[OJXS] human gut metagenome; human gut
1142
1046
-
SeC
TCA
[ENA]
¢þ
>WENV182812721
OJXU01001864
[OJXU] human gut metagenome; human gut
623
719
+
SeC
TCA
[ENA]
¢þ
>WENV182823146
OKBS01000097
[OKBS] human gut metagenome; human gut
10263
10167
-
SeC
TCA
[ENA]
¢þ
>WENV182828039
OKDE01002984
[OKDE] human gut metagenome; human gut
129
33
-
SeC
TCA
[ENA]
¢þ
>WENV182845174
OKJA01000069
[OKJA] human gut metagenome; human gut
10025
9929
-
SeC
TCA
[ENA]
¢þ
>WENV182845494
OKJD01002343
[OKJD] human gut metagenome; human gut
697
793
+
SeC
TCA
[ENA]
¢þ
>WENV182848602
OKKI01000636
[OKKI] human gut metagenome; human gut
23
119
+
SeC
TCA
[ENA]
¢þ
>WENV182849037
OKKN01000107
[OKKN] human gut metagenome; human gut
27735
27831
+
SeC
TCA
[ENA]
¢þ
>WENV182862179
OKPK01000067
[OKPK] human gut metagenome; human gut
10145
10049
-
SeC
TCA
[ENA]
¢þ
>WENV182862465
OKPM01003997
[OKPM] human gut metagenome; human gut
558
462
-
SeC
TCA
[ENA]
¢þ
>WENV182863617
OKPU01000082
[OKPU] human gut metagenome; human gut
39718
39814
+
SeC
TCA
[ENA]
¢þ
>WENV182938398
OKVD01006648
[OKVD] human gut metagenome; human gut
213
309
+
SeC
TCA
[ENA]
¢þ
>WENV182951897
OKVV01000323
[OKVV] human gut metagenome; human gut
31984
32080
+
SeC
TCA
[ENA]
¢þ
>WENV182963082
OKWP01000219
[OKWP] human gut metagenome; stool
28647
28743
+
SeC
TCA
[ENA]
¢þ
>WENV183094495
OLNC01020996
[OLNC] human gut metagenome; faeces
255
351
+
SeC
TCA
[ENA]
¢þ
>WENV183171151
OLPB01022737
[OLPB] human gut metagenome; faeces
302
398
+
SeC
TCA
[ENA]
¢þ
>WENV183238612
OLQZ01001782
[OLQZ] human gut metagenome; faeces
1491
1395
-
SeC
TCA
[ENA]
¢þ
>WENV183284259
OLSD01009463
[OLSD] human gut metagenome; faeces
3169
3072
-
SeC
TCA
[ENA]
¢þ
>WENV170540009
CWGS01000148
[CWGS] human gut metagenome; ENVO:feces
859
955
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170540587
CWHE01000192
[CWHE] human gut metagenome; ENVO:feces
41997
42093
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170540846
CWHL01000184
[CWHL] human gut metagenome; ENVO:feces
859
955
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170542912
CXQK01002953
[CXQK] human gut metagenome genome assembly hC5, contig hC5_contig005179.; ENVO:feces
208
112
-
SeC(p)
TCA
[ENA]
¢þ
>WENV170545853
CXSI01003507
[CXSI] human gut metagenome genome assembly hG6, contig hG6_contig004768.; ENVO:feces
430
334
-
SeC(p)
TCA
[ENA]
¢þ
>WENV170550281
CXVT01001309
[CXVT] Human gut metagenome genome assembly, contig: mG12_contig003027.; ENVO:feces
367
460
+
SeC(p)
TCA
[ENA]
¢þ
>PL191000826
CP030933
Firmicutes
Enterococcus gilvus CR1 plasmid:pCR1A (CP030933)
575599
575503
-
Sec
TCA
[ENA]
¡û
>C181074963
CP023011
Bacillota
Enterococcus hirae FDAARGOS_234 [CP023011]
2040222
2040319
+
SeC
TCA
-
¡û
>C191120837
CP034169
Bacillota
Enterococcus avium 352 [CP034169]
775452
775356
-
Sec
TCA
-
¡û
>C191204846
LR134297
Bacillota
Enterococcus hirae NCTC12368 [LR134297]
1415236
1415333
+
Sec
TCA
-
¡û
>W141699599
JMIG01000002
Bacillota
Enterococcus hirae [JMIG]
152776
152683
-
SeC(p)
TCA
[ENA]
¡û
>W1910177325
BJDQ01000012
Bacillota
Enterococcus dongliensis Apr-63 [BJDQ]
19241
19145
-
Sec
TCA
[ENA]
¡û
>W1910177634
BJDX01000002
Bacillota
Enterococcus xiangfangensis 11097 [BJDX]
201604
201700
+
Sec
TCA
[ENA]
¡û
>W1910609968
LESA01000005
Bacillota
Enterococcus hirae 104EA1 [LESA]
37305
37402
+
Sec
TCA
[ENA]
¡û
>W1910610002
LESB01000003
Bacillota
Enterococcus hirae 10AEA1 [LESB]
32845
32942
+
Sec
TCA
[ENA]
¡û
>W1910610063
LESC01000002
Bacillota
Enterococcus hirae 126EA1 [LESC]
733962
733865
-
Sec
TCA
[ENA]
¡û
>W1910610115
LESD01000006
Bacillota
Enterococcus hirae 175EA1 [LESD]
37305
37402
+
Sec
TCA
[ENA]
¡û
>W1910610194
LESE01000008
Bacillota
Enterococcus hirae 186EA1 [LESE]
37364
37461
+
Sec
TCA
[ENA]
¡û
>W1910610236
LESF01000002
Bacillota
Enterococcus hirae 260AEA1 [LESF]
37305
37402
+
Sec
TCA
[ENA]
¡û
>W1910610291
LESG01000002
Bacillota
Enterococcus hirae 269EA1 [LESG]
37305
37402
+
Sec
TCA
[ENA]
¡û
>W1910610359
LESH01000002
Bacillota
Enterococcus hirae 321EA1 [LESH]
217023
216926
-
Sec
TCA
[ENA]
¡û
>W1910610406
LESI01000002
Bacillota
Enterococcus hirae 41EA1 [LESI]
32778
32875
+
Sec
TCA
[ENA]
¡û
>W1910610474
LESJ01000003
Bacillota
Enterococcus hirae 88EA1 [LESJ]
227547
227450
-
Sec
TCA
[ENA]
¡û
>W1911084021
NNBZ01000001
Bacillota
Enterococcus pseudoavium CBA7133 [NNBZ]
429105
429201
+
Sec
TCA
[ENA]
¡û
>W1911085746
NNSV01000012
Bacillota
Enterococcus hirae AAK_VMS5 [NNSV]
660691
660594
-
Sec
TCA
[ENA]
¡û
>W1911238935
NSDC01000040
Bacillota
Enterococcus hirae 1013 [NSDC]
226493
226590
+
Sec
TCA
[ENA]
¡û
>W1911239003
NSDD01000088
Bacillota
Enterococcus hirae 1725 [NSDD]
47277
47374
+
Sec
TCA
[ENA]
¡û
>W1810045386
NBSL01000003
Bacillota
Enterococcus avium FDAARGOS_182 [NBSL]
380781
380877
+
Sec
TCA
[ENA]
¡û
>W1810045452
NBSM01000004
Bacillota
Enterococcus avium FDAARGOS_180 [NBSM]
753744
753648
-
Sec
TCA
[ENA]
¡û
>W1810273873
PSQK01000004
Bacillota
Enterococcus hirae UPM01 [PSQK]
56110
56207
+
Sec
TCA
[ENA]
¡û
>W1810273933
PSQL01000004
Bacillota
Enterococcus hirae UPM02 [PSQL]
56110
56207
+
Sec
TCA
[ENA]
¡û
>W1810586785
QFFP01000003
Bacillota
Enterococcus hirae HPCN4 [QFFP]
126073
125976
-
Sec
TCA
[ENA]
¡û
>W1810817912
QSCV01000011
Bacillota
Enterococcus avium OF02-3AC [QSCV]
89573
89669
+
Sec
TCA
[ENA]
¡û
>W1510079580
CDRF01000673
Bacillota
Enterococcus hirae 1b3B [CDRF]
355
262
-
SeC
TCA
[ENA]
¡û
>W1511356481
JRUH01000024
Bacillota
Enterococcus hirae 70-61-3 [JRUH]
56037
56130
+
SeC
TCA
[ENA]
¡û
>W1511440765
JUPQ01000636
Bacillota
Enterococcus hirae 877_EHIR [JUPQ]
1568
1472
-
SeC
TCA
[ENA]
¡û
>W1511447837
JUZB01000161
Bacillota
Enterococcus avium 639_EFCM [JUZB]
8111
8015
-
SeC
TCA
[ENA]
¡û
>W1511694065
LGAO01000040
Bacillota
Enterococcus hirae 19m [LGAO]
37289
37382
+
SeC
TCA
[ENA]
¡û
>C121013953
CP003504
Bacillota
Enterococcus hirae ATCC 9790 [CP003504]
2283635
2283728
+
SeC
TCA
-
¡û
>C161089241
CP015516
Bacillota
Enterococcus hirae R17 [CP015516]
1420038
1419945
-
SeC(p)
TCA
[Ensembl]
¡û
>W1610066999
BCQF01000027
Bacillota
Enterococcus pseudoavium NBRC 100491 [BCQF]
23142
23238
+
SeC(p)
TCA
[ENA]
¡û
>W1730029639
MJDT01000030
Bacillota
Enterococcus hirae [MJDT]
15429
15522
+
SeC(p)
TCA
[ENA]
¡û
>W1710064430
BCQF01000027
Bacillota
Enterococcus pseudoavium NBRC 100491 [BCQF]
23142
23238
+
SeC(p)
TCA
[ENA]
¡û
>W1710553526
FOHR01000015
Bacillota
Enterococcus malodoratus kppr-6 [FOHR]
53921
54017
+
SeC(p)
TCA
[ENA]
¡û
>W1710659110
JXKF01000003
Bacillota
Enterococcus avium [JXKF]
35800
35704
-
SeC(p)
TCA
[ENA]
¡û
>W1710659439
JXKQ01000007
Bacillota
Enterococcus hermanniensis [JXKQ]
98639
98543
-
SeC(p)
TCA
[ENA]
¡û
>W1710659471
JXKR01000010
Bacillota
Enterococcus hirae [JXKR]
59207
59114
-
SeC(p)
TCA
[ENA]
¡û
>W1710659567
JXKU01000007
Bacillota
Enterococcus malodoratus [JXKU]
93016
93112
+
SeC(p)
TCA
[ENA]
¡û
>W1710743273
LGUL01000005
Bacillota
Enterococcus hirae 78-09-C1 [LGUL]
119929
119836
-
SeC(p)
TCA
[ENA]
¡û
>W1710743302
LGUM01000015
Bacillota
Enterococcus hirae 67-03-C5 [LGUM]
28046
27953
-
SeC(p)
TCA
[ENA]
¡û
>W1710743350
LGUN01000010
Bacillota
Enterococcus hirae 57-03-H11 [LGUN]
58715
58808
+
SeC(p)
TCA
[ENA]
¡û
>W1710743424
LGUO01000024
Bacillota
Enterococcus hirae 57-09-G6 [LGUO]
34402
34495
+
SeC(p)
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK