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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127693 (23 seq.)
>A171000101
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
1163965
1164040
+
Arg
CCT
-
¡û
>A171000911
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
1540930
1541005
+
Arg
CCT
-
¡û
>A171003996
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
2300858
2300934
+
Arg
CCT
-
¡û
>A171007320
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1860809
1860883
+
Arg
CCT
-
¡û
>A171007351
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
1154279
1154355
+
Arg
CCT
-
¡û
>A171007403
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
2301211
2301287
+
Arg
CCT
-
¡û
>A171007713
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1551338
1551413
+
Arg
CCT
-
¡û
>WENV180036635
FVAA010227110
[FVAA] soil metagenome; Soil
668
592
-
Arg
CCT
[ENA]
¢þ
>WENV181229675
OFEK01000020
[OFEK] activated sludge metagenome; Anaerobic digester
11669
11744
+
Arg
CCT
[ENA]
¢þ
>WENV181230337
OFEK01000685
[OFEK] activated sludge metagenome; Anaerobic digester
30768
30694
-
Arg
CCT
[ENA]
¢þ
>At1664
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
1181154
1181228
+
Arg
CCT
[Ensembl]
¡û
>WENV170669134
LAHR01015108
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
77
152
+
Arg
CCT
[ENA]
¢þ
>WENV170676699
LDZS01001968
[LDZS] terrestrial metagenome; oil reservoir sample K3
3747
3672
-
Arg
CCT
[ENA]
¢þ
>WENV170677315
LDZT01004917
[LDZT] terrestrial metagenome; oil reservoir sample SB1
13351
13275
-
Arg
CCT
[ENA]
¢þ
>WENV170970289
MTKW01060717
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
782
859
+
Arg
CCT
[ENA]
¢þ
>W1910574940
JQJK01000016
Euryarchaeota
Methanobacterium veterum MK4 [JQJK]
48619
48544
-
Arg
CCT
[ENA]
¡û
>W1910574968
JQKN01000012
Euryarchaeota
Methanobacterium arcticum M2 [JQKN]
42951
42876
-
Arg
CCT
[ENA]
¡û
>W1910635137
LMVM01000012
Euryarchaeota
Methanobacterium bryantii M.o.H. [LMVM]
293429
293354
-
Arg
CCT
[ENA]
¡û
>W1910655462
LZPM01000029
Euryarchaeota
Methanobacterium sp. A39 [LZPM]
118095
118170
+
Arg
CCT
[ENA]
¡û
>W1911722803
QREL01000001
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
73591
73516
-
Arg
CCT
[ENA]
¡û
>W1610006242
AMGN01000054
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
29823
29747
-
Arg
CCT
[ENA]
¡û
>W1610010998
AMPO01000001
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
153669
153745
+
Arg
CCT
[ENA]
¡û
>W1610613869
LGGL01000024
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
13351
13275
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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