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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147332 (84 seq.)
>W1710878066
LMQQ01000001
Betaproteobacteria
Methylophilus sp. Leaf414 [LMQQ]
743954
744030
+
Met
CAT
[ENA]
¡û
>W1710878148
LMQS01000001
Betaproteobacteria
Methylophilus sp. Leaf416 [LMQS]
687990
688066
+
Met
CAT
[ENA]
¡û
>W1710878375
LMQX01000001
Betaproteobacteria
Methylophilus sp. Leaf459 [LMQX]
687705
687781
+
Met
CAT
[ENA]
¡û
>W1710893302
LNEP01000006
Betaproteobacteria
Betaproteobacteria bacterium Ga0077540 [LNEP]
147355
147431
+
Met
CAT
[ENA]
¡û
>W1711224656
LXUF01000001
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
635058
634982
-
Met
CAT
[ENA]
¡û
>W131163893
ARAC01000001
Betaproteobacteria
Methylophilus sp. 42 [ARAC]
882522
882446
-
Met
CAT
[ENA]
¡û
>W131164743
ARBA01000002
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
319812
319736
-
Met
CAT
[ENA]
¡û
>W131170294
ARFK01000004
Betaproteobacteria
Methylophilus sp. 1 [ARFK]
303413
303337
-
Met
CAT
[ENA]
¡û
>W131176246
ARJW01000016
Betaproteobacteria
Methylophilus methylotrophus DSM 46235 = ATCC 53528 [ARJW]
579642
579718
+
Met
CAT
[ENA]
¡û
>W131186181
ARVX01000001
Betaproteobacteria
Methylotenera versatilis 79 [ARVX]
229949
230025
+
Met
CAT
[ENA]
¡û
>W131186391
ARWC01000001
Betaproteobacteria
Methylotenera sp. 1P/1 [ARWC]
1231922
1231998
+
Met
CAT
[ENA]
¡û
>W131186556
ARWF01000001
Betaproteobacteria
Methylotenera sp. 73s [ARWF]
1109424
1109500
+
Met
CAT
[ENA]
¡û
>C013407
CP000284
Betaproteobacteria
Methylobacillus flagellatus KT [CP000284]
701331
701255
-
Met
CAT
[Ensembl]
¡û
>WENV180094458
MTBK01008212
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
353
429
+
Met
CAT
[ENA]
¢þ
>WENV016795
AACY020470209
Marine microbial communities from Global Ocean Sampling (GOS)
2175
2253
+
Met
CAT
[ENA]
>WENV181187876
OEOE01000932
[OEOE] activated sludge metagenome; Activated Sludge
1836
1912
+
Met
CAT
[ENA]
¢þ
>WENV181187877
OEOE01001005
[OEOE] activated sludge metagenome; Activated Sludge
3193
3117
-
Met
CAT
[ENA]
¢þ
>WENV181187892
OEOE01001323
[OEOE] activated sludge metagenome; Activated Sludge
870
794
-
Met
CAT
[ENA]
¢þ
>WENV181188157
OEOE01035184
[OEOE] activated sludge metagenome; Activated Sludge
14
90
+
Met
CAT
[ENA]
¢þ
>WENV181189078
OEOF01000306
[OEOF] activated sludge metagenome; Activated Sludge
819
743
-
Met
CAT
[ENA]
¢þ
>WENV181189109
OEOF01000786
[OEOF] activated sludge metagenome; Activated Sludge
14
90
+
Met
CAT
[ENA]
¢þ
>WENV181189110
OEOF01000809
[OEOF] activated sludge metagenome; Activated Sludge
1492
1416
-
Met
CAT
[ENA]
¢þ
>WENV181222542
OFDC01000006
[OFDC] hot springs metagenome; Water
208835
208911
+
Met
CAT
[ENA]
¢þ
>WENV181222911
OFDC01000601
[OFDC] hot springs metagenome; Water
17600
17676
+
Met
CAT
[ENA]
¢þ
>WENV181226788
OFDN01000069
[OFDN] hot springs metagenome; Water
7232
7308
+
Met
CAT
[ENA]
¢þ
>WENV181226976
OFDN01000706
[OFDN] hot springs metagenome; Water
7742
7666
-
Met
CAT
[ENA]
¢þ
>WENV181364839
OFPE01001373
[OFPE] sediment metagenome; Lake sediment
964
1040
+
Met
CAT
[ENA]
¢þ
>WENV181380006
OFRD01020516
[OFRD] wastewater metagenome; Exp Tend CN 100WW
263
187
-
Met
CAT
[ENA]
¢þ
>W141220068
AZXN01000001
Betaproteobacteria
Methylophilus sp. 5 [AZXN]
1981348
1981272
-
Met
CAT
[ENA]
¡û
>W141229537
BAMT01000004
Betaproteobacteria
Methylobacillus glycogenes JCM 2850 [BAMT]
104458
104382
-
Met
CAT
[ENA]
¡û
>W141231908
BAUS01000002
Betaproteobacteria
Methylophilus sp. OH31 [BAUS]
299364
299288
-
Met
CAT
[ENA]
¡û
>W141350152
JCKJ01000001
Betaproteobacteria
Methylophilaceae bacterium 11 [JCKJ]
2108370
2108446
+
Met
CAT
[ENA]
¡û
>WENV183726790
PJTO01000174
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
22453
22377
-
Met
CAT
[ENA]
¢þ
>WENV183729357
PJTQ01026786
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
331
255
-
Met
CAT
[ENA]
¢þ
>WENV183736754
PJUD01000014
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
233075
232999
-
Met
CAT
[ENA]
¢þ
>WENV183739455
PJUE01018712
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
594
670
+
Met
CAT
[ENA]
¢þ
>WENV183740705
PJUF01007144
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
2506
2430
-
Met
CAT
[ENA]
¢þ
>WENV170558843
CXWL01094896
[CXWL] groundwater metagenome; biofilm material
29059
29135
+
Met
CAT
[ENA]
¢þ
>WENV170577544
FSSH01000144
[FSSH] freshwater metagenome; drinking water
168759
168835
+
Met
CAT
[ENA]
¢þ
>WENV170601279
FUWD010165004
[FUWD] metagenome; unknown
120
44
-
Met
CAT
[ENA]
¢þ
>WENV170654553
JRYL01000496
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
226473
226549
+
Met
CAT
[ENA]
¢þ
>WENV170705468
LNAO01000776
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
4835
4911
+
Met
CAT
[ENA]
¢þ
>WENV170706538
LNAP01004033
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
22
98
+
Met
CAT
[ENA]
¢þ
>WENV170707707
LNAP01030646
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
22
98
+
Met
CAT
[ENA]
¢þ
>WENV170709203
LNFM01000180
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
147306
147382
+
Met
CAT
[ENA]
¢þ
>WENV170710578
LNFM01002071
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
53156
53232
+
Met
CAT
[ENA]
¢þ
>WENV170712341
LNFM01012234
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
96
20
-
Met
CAT
[ENA]
¢þ
>WENV170961635
MLJW01000269
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
17411
17487
+
Met
CAT
[ENA]
¢þ
>W09101009
AADX02000004
Betaproteobacteria
Methylobacillus flagellatus KT [AADX]
157503
157579
+
Met
CAT
[ENA]
¡û
>W141819378
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
1475583
1475507
-
Met
CAT
[ENA]
¡û
>W1910547757
FZOA01000007
Betaproteobacteria
Methylobacillus rhizosphaerae Ca-68 [FZOA]
58664
58588
-
Met
CAT
[ENA]
¡û
>W1910730025
MHBU01000015
Betaproteobacteria
Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 [MHBU]
1055
979
-
Met
CAT
[ENA]
¡û
>C09107573
CP001674
Betaproteobacteria
Methylovorus glucosotrophus SIP3-4 [CP001674]
2144338
2144414
+
Met
CAT
[Ensembl]
¡û
>C09107800
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
2008640
2008716
+
Met
CAT
[Ensembl]
¡û
>W1911624007
PQVH01000012
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
216362
216438
+
Met
CAT
[ENA]
¡û
>SRA1003117
SRR002326.211703
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
86
162
+
Met
CAT
[SRA]
>C151089475
CP012020
Betaproteobacteria
Methylophilus sp. TWE2 [CP012020]
883794
883718
-
Met
CAT
[Ensembl]
¡û
>ENV09000277
ABSN01042775
Freshwater sediment metagenome lwFormaldehyde_C1
347
271
-
Met
CAT
[ENA]
¡û
>ENV09000418
ABSN01066352
Freshwater sediment metagenome lwFormaldehyde_C1
540
616
+
Met
CAT
[ENA]
¡û
>ENV09000744
ABSP01028154
Freshwater sediment metagenome lwMethane_C1
831
755
-
Met
CAT
[ENA]
¡û
>ENV09000772
ABSP01033361
Freshwater sediment metagenome lwMethane_C1
484
560
+
Met
CAT
[ENA]
¡û
>ENV09000828
ABSP01046369
Freshwater sediment metagenome lwMethane_C1
239
315
+
Met
CAT
[ENA]
¡û
>ENV09001278
ABSR01000108
Freshwater sediment metagenome lwMethylamine_C1
646
570
-
Met
CAT
[ENA]
¡û
>ENV09001328
ABSR01001590
Freshwater sediment metagenome lwMethylamine_C1
665
741
+
Met
CAT
[ENA]
¡û
>ENV09001339
ABSR01002162
Freshwater sediment metagenome lwMethylamine_C1
651
575
-
Met
CAT
[ENA]
¡û
>ENV09001352
ABSR01002458
Freshwater sediment metagenome lwMethylamine_C1
1778
1854
+
Met
CAT
[ENA]
¡û
>ENV09001416
ABSR01006001
Freshwater sediment metagenome lwMethylamine_C1
834
758
-
Met
CAT
[ENA]
¡û
>ENV09001488
ABSR01016852
Freshwater sediment metagenome lwMethylamine_C1
552
628
+
Met
CAT
[ENA]
¡û
>ENV09001555
ABSR01028671
Freshwater sediment metagenome lwMethylamine_C1
522
446
-
Met
CAT
[ENA]
¡û
>ENV09001564
ABSR01030211
Freshwater sediment metagenome lwMethylamine_C1
509
585
+
Met
CAT
[ENA]
¡û
>ENV09001573
ABSR01032591
Freshwater sediment metagenome lwMethylamine_C1
44
120
+
Met
CAT
[ENA]
¡û
>ENV09001584
ABSR01033361
Freshwater sediment metagenome lwMethylamine_C1
559
635
+
Met
CAT
[ENA]
¡û
>C10109356
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
2350881
2350957
+
Met
CAT
[Ensembl]
¡û
>C11114207
CP002252
Betaproteobacteria
Methylovorus sp. MP688 [CP002252]
2106268
2106344
+
Met
CAT
[Ensembl]
¡û
>W1511431977
JUGE01000001
Betaproteobacteria
Methylotenera sp. N17 [JUGE]
1765420
1765496
+
Met
CAT
[ENA]
¡û
>W1511432030
JUGF01000002
Betaproteobacteria
Methylotenera versatilis 7 [JUGF]
1333388
1333312
-
Met
CAT
[ENA]
¡û
>W1511433384
JUHE01000001
Betaproteobacteria
Methylophilus sp. Q8 [JUHE]
324182
324258
+
Met
CAT
[ENA]
¡û
>W1511433544
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
2351455
2351379
-
Met
CAT
[ENA]
¡û
>W1610740412
LMQQ01000001
Betaproteobacteria
Methylophilus sp. Leaf414 [LMQQ]
743954
744030
+
Met
CAT
[ENA]
¡û
>W1610740494
LMQS01000001
Betaproteobacteria
Methylophilus sp. Leaf416 [LMQS]
687990
688066
+
Met
CAT
[ENA]
¡û
>W1610740721
LMQX01000001
Betaproteobacteria
Methylophilus sp. Leaf459 [LMQX]
687705
687781
+
Met
CAT
[ENA]
¡û
>W1610753568
LNEP01000006
Betaproteobacteria
Betaproteobacteria bacterium Ga0077540 [LNEP]
147355
147431
+
Met
CAT
[ENA]
¡û
>W1611008620
LXUF01000001
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
635058
634982
-
Met
CAT
[ENA]
¡û
>W1710520768
FNFX01000001
Betaproteobacteria
Methylophilus rhizosphaerae [FNFX]
693867
693943
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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