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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148738 (8 seq.)
>A178000009
AP012489
Thermoproteota
Aeropyrum camini SY1 = JCM 12091 [AP012489]
1108765
1108652
-
Pro
GGG
-
¡û
>A178000165
CP002098
Thermoproteota
Ignisphaera aggregans DSM 17230 [CP002098]
1388845
1388754
-
Pro
GGG
-
¡û
>A178000175
CP002363
Thermoproteota
Desulfurococcus mucosus DSM 2162 [CP002363]
578880
578774
-
Pro
GGG
-
¡û
>A178000275
CP002838
Thermoproteota
Pyrolobus fumarii 1A [CP002838]
614048
614156
+
Pro
GGG
-
¡û
>A178000322
CP003321
Thermoproteota
Desulfurococcus amylolyticus DSM 16532 [CP003321]
802260
802155
-
Pro
GGG
-
¡û
>A178000341
CP003531
Thermoproteota
Thermogladius calderae 1633 [CP003531]
70048
70153
+
Pro
GGG
-
¡û
>At0040
BA000002
Thermoproteota
Aeropyrum pernix K1 [BA000002]
1161734
1161620
-
Pro
GGG
[Ensembl]
¡û
>A211000293
CP062310
Thermoproteota
Thermofilum sp. 3507LT [CP062310]
756517
756591
+
Pro
GGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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