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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161247 (45 seq.)
>W131177725
ARKZ01000038
Bacteroidota
Proteiniphilum acetatigenes DSM 18083 [ARKZ]
109569
109495
-
Pro
CGG
[ENA]
¡û
>W1711392350
MENM01000075
Bacteroidota
Bacteroidetes bacterium GWC1_47_7 [MENM]
21301
21377
+
Pro
CGG
[ENA]
¡û
>W1711392518
MENQ01000026
Bacteroidota
Bacteroidetes bacterium GWC2_46_850 [MENQ]
41490
41566
+
Pro
CGG
[ENA]
¡û
>W1711392623
MENT01000011
Bacteroidota
Bacteroidetes bacterium GWD2_45_23 [MENT]
41451
41527
+
Pro
CGG
[ENA]
¡û
>W1711502910
MKTD01000035
Bacteroidota
Bacteroidia bacterium 43-41 [MKTD]
59837
59761
-
Pro
CGG
[ENA]
¡û
>W1711502939
MKTE01000015
Bacteroidota
Bacteroidia bacterium 44-10 [MKTE]
346775
346699
-
Pro
CGG
[ENA]
¡û
>W1711629351
MPOV01000099
Bacteroidota
Proteiniphilum sp. EBM-39 [MPOV]
38428
38504
+
Pro
CGG
[ENA]
¡û
>C171129196
LT605205
Bacteroidota
Proteiniphilum saccharofermentans M3/6 [LT605205]
4063042
4063116
+
Pro
CGG
-
¡û
>C171129320
LT608328
Bacteroidota
Petrimonas mucosa ING2-E5A [LT608328]
160217
160141
-
Pro
CGG
-
¡û
>WENV180296786
OBJA01002648
[OBJA] soil metagenome; sediment, water from around vicinity
9728
9654
-
Pro
CGG
[ENA]
¡û
>WENV181231106
OFEK01009774
[OFEK] activated sludge metagenome; Anaerobic digester
530
456
-
Pro
CGG
[ENA]
¡û
>WENV170003056
AGTN01212681
[AGTN] bioreactor metagenome; poplar biomass
17849
17775
-
Pro
CGG
[ENA]
¡û
>WENV170560819
CZCA01000647
[CZCA] anaerobic digester metagenome; anaerobic digester
4784
4860
+
Pro
CGG
[ENA]
¡û
>WENV170643619
JMBV01000008
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
81489
81415
-
Pro
CGG
[ENA]
¡û
>WENV170644256
JMBW01002843
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
1829
1755
-
Pro
CGG
[ENA]
¡û
>WENV170644966
JMBX01000488
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
415
489
+
Pro
CGG
[ENA]
¡û
>WENV170655786
JTFN01073964
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
673
599
-
Pro
CGG
[ENA]
¡û
>WENV170656459
JTFO01017324
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
974
1048
+
Pro
CGG
[ENA]
¡û
>WENV170656556
JTFO01024786
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
136
62
-
Pro
CGG
[ENA]
¡û
>WENV170670203
LAHS01104639
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
277
353
+
Pro
CGG
[ENA]
¡û
>WENV170679017
LDZU01006493
[LDZU] terrestrial metagenome; oil reservoir sample SB2
4596
4522
-
Pro
CGG
[ENA]
¡û
>WENV170685142
LFRM01074805
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
323
397
+
Pro
CGG
[ENA]
¡û
>WENV170688365
LFRM01241570
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
17
93
+
Pro
CGG
[ENA]
¡û
>WENV170690173
LFRM01328291
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3511
3435
-
Pro
CGG
[ENA]
¡û
>WENV170707450
LNAP01021230
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1213
1139
-
Pro
CGG
[ENA]
¡û
>WENV170717386
LSQX01033978
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
19143
19217
+
Pro
CGG
[ENA]
¡û
>WENV170720057
LSQX01139215
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
36904
36830
-
Pro
CGG
[ENA]
¡û
>WENV170722020
LSQX01213012
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
13437
13361
-
Pro
CGG
[ENA]
¡û
>WENV170724733
LSQX01316887
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3175
3101
-
Pro
CGG
[ENA]
¡û
>WENV170726494
LSQX01382738
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
184
110
-
Pro
CGG
[ENA]
¡û
>WENV170967045
MTKW01000172
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2807
2731
-
Pro
CGG
[ENA]
¡û
>WENV170967896
MTKW01004167
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5026
4950
-
Pro
CGG
[ENA]
¡û
>C181004287
AP018040
Bacteroidota
Petrimonas sp. IBARAKI [AP018040]
148279
148353
+
Pro
CGG
-
¡û
>W1810192611
PKMK01000009
Bacteroidota
Dysgonamonadaceae bacterium XHS2771 [PKMK]
61735
61661
-
Pro
CGG
[ENA]
¡û
>W2011411525
RDSD01000010
Bacteroidota
Proteiniphilum sp. X52 [RDSD]
57702
57628
-
Pro
CGG
[ENA]
¡û
>W2011496122
RXHR01000016
Bacteroidota
Porphyromonadaceae bacterium SYSU GA16107 [RXHR]
278
204
-
Pro
CGG
[ENA]
¡û
>W2011496165
RXHS01000018
Bacteroidota
Porphyromonadaceae bacterium SYSU GA16112 [RXHS]
46367
46441
+
Pro
CGG
[ENA]
¡û
>C211273661
CP070276
Bacteroidota
Dysgonomonadaceae bacterium zrk40 [CP070276]
1967452
1967378
-
Pro
CGG
-
¡û
>C231131286
CP073586
Bacteroidota
Proteiniphilum propionicum JNU-WLY501 [CP073586]
1255708
1255634
-
Pro
CGG
-
¡û
>W1610614523
LGHH01000036
Bacteroidota
Proteiniphilum sp. 51_7 [LGHH]
4596
4522
-
Pro
CGG
[ENA]
¡û
>W1710533107
FNQW01000011
Bacteroidota
Porphyromonadaceae bacterium KH3R12 [FNQW]
326
400
+
Pro
CGG
[ENA]
¡û
>W1710567506
FOSU01000007
Bacteroidota
Porphyromonadaceae bacterium KH3CP3RA [FOSU]
163926
163852
-
Pro
CGG
[ENA]
¡û
>W1710576022
FOZR01000012
Bacteroidota
Porphyromonadaceae bacterium NLAE-zl-C104 [FOZR]
45758
45684
-
Pro
CGG
[ENA]
¡û
>W1710578558
FPBR01000008
Bacteroidota
Porphyromonadaceae bacterium KHP3R9 [FPBR]
19638
19714
+
Pro
CGG
[ENA]
¡û
>W1710735504
LGHH01000036
Bacteroidota
Proteiniphilum sp. 51_7 [LGHH]
4596
4522
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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