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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239893 (43 seq.)
>W131053712
ANAH01000053
Myxococcota
Cystobacter fuscus DSM 2262 [ANAH]
211283
211358
+
Gly
TCC
[ENA]
¡û
>W131086651
AOBT01000022
Myxococcota
Myxococcus xanthus DZF1 [AOBT]
164390
164465
+
Gly
TCC
[ENA]
¡û
>W1711625276
MPIN01000006
Myxococcota
Cystobacter ferrugineus [MPIN]
453
378
-
Gly
TCC
[ENA]
¡û
>W1711628680
MPOI01000027
Myxococcota
Archangium sp. Cb G35 [MPOI]
68956
69031
+
Gly
TCC
[ENA]
¡û
>C014487
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
3593312
3593387
+
Gly
TCC
[Ensembl]
¡û
>w012169
AAMD01000155
Myxococcota
Stigmatella aurantiaca DW4/3-1 [AAMD]
10839
10767
-
Gly
TCC
[ENA]
¡û
>WENV180310997
OBJT01081189
[OBJT] soil metagenome; soil
86
161
+
Gly
TCC
[ENA]
¢þ
>WENV181412455
OGCK01000373
[OGCK] hot springs metagenome; hot spring sediment
5577
5504
-
Gly
TCC
[ENA]
¢þ
>WENV170624346
FUWD013180202
[FUWD] metagenome; unknown
740
665
-
Gly
TCC
[ENA]
¢þ
>WENV170632633
FUWD013385414
[FUWD] metagenome; unknown
740
665
-
Gly
TCC
[ENA]
¢þ
>WENV170969697
MTKW01037126
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
887
962
+
Gly
TCC
[ENA]
¢þ
>WENV170969743
MTKW01038229
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
403
478
+
Gly
TCC
[ENA]
¢þ
>WENV170993473
MWWB01317455
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
316
391
+
Gly
TCC
[ENA]
¢þ
>C181057876
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
7905853
7905778
-
Gly
TCC
-
¡û
>C181059860
CP022163
Myxococcota
Melittangium boletus DSM 14713 [CP022163]
114709
114634
-
Gly
TCC
-
¡û
>C181060628
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
3606179
3606254
+
Gly
TCC
-
¡û
>C191013123
CP017169
Myxococcota
Myxococcus xanthus GH3.5.6c2 [CP017169]
3640578
3640653
+
Gly
TCC
-
¡û
>C191013188
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
3527330
3527405
+
Gly
TCC
-
¡û
>C191013254
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
3384758
3384833
+
Gly
TCC
-
¡û
>C191013319
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
3582333
3582408
+
Gly
TCC
-
¡û
>C191013384
CP017173
Myxococcota
Myxococcus xanthus MC3.3.5c16 [CP017173]
3568878
3568953
+
Gly
TCC
-
¡û
>C191013449
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
3568878
3568953
+
Gly
TCC
-
¡û
>C191128676
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
5976731
5976656
-
Gly
TCC
-
¡û
>W141695214
JMCB01000023
Myxococcota
Hyalangium minutum [JMCB]
1315
1240
-
Gly
TCC
[ENA]
¡û
>W141695277
JMCC01000078
Myxococcota
Enhygromyxa salina [JMCC]
63713
63788
+
Gly
TCC
[ENA]
¡û
>W141806627
JPMI01000061
Myxococcota
Archangium violaceum Cb vi76 [JPMI]
45926
46001
+
Gly
TCC
[ENA]
¡û
>W1911701598
QNUN01000010
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
256
181
-
Gly
TCC
[ENA]
¡û
>W1810452228
PZOX01000018
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
309369
309444
+
Gly
TCC
[ENA]
¡û
>W1810884672
QUMU01000002
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
778
703
-
Gly
TCC
[ENA]
¡û
>C151008173
CP006003
Myxococcota
Myxococcus fulvus 124B02 [CP006003]
4751426
4751501
+
Gly
TCC
[Ensembl]
¡û
>C151083587
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
8245811
8245736
-
Gly
TCC
[Ensembl]
¡û
>C151091042
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
4941945
4941870
-
Gly
TCC
[Ensembl]
¡û
>C11114316
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
5487485
5487560
+
Gly
TCC
[Ensembl]
¡û
>C11119137
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
6201492
6201417
-
Gly
TCC
[Ensembl]
¡û
>C121012076
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
6267000
6266925
-
Gly
TCC
[Ensembl]
¡û
>W121102889
AKXT01000050
Myxococcota
Myxococcus hansupus DSM 436 [AKXT]
123279
123354
+
Gly
TCC
[ENA]
¡û
>W121103123
AKYI01000852
Myxococcota
Myxococcus xanthus DZ2 [AKYI]
274
199
-
Gly
TCC
[ENA]
¡û
>C131011661
CP004025
Myxococcota
Myxococcus stipitatus DSM 14675 [CP004025]
4436332
4436407
+
Gly
TCC
[Ensembl]
¡û
>W1710513732
FNAJ01000012
Myxococcota
Myxococcus virescens [FNAJ]
230758
230833
+
Gly
TCC
[ENA]
¡û
>W1710529808
FNOH01000011
Myxococcota
Myxococcus xanthus [FNOH]
303
228
-
Gly
TCC
[ENA]
¡û
>W1710544132
FOAP01000028
Myxococcota
Stigmatella aurantiaca [FOAP]
343
268
-
Gly
TCC
[ENA]
¡û
>W1710554002
FOIB01000009
Myxococcota
Myxococcus fulvus [FOIB]
280
205
-
Gly
TCC
[ENA]
¡û
>W1710554359
FOIJ01000017
Myxococcota
Stigmatella erecta [FOIJ]
343
268
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK