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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281920 (44 seq.)
>W1910748566
MIXX01000004
Bacillota
Lactobacillus sanfranciscensis TMW 1.2137 [MIXX]
47563
47489
-
Thr
CGT
[ENA]
¡û
>W1910748627
MIXY01000023
Bacillota
Lactobacillus sanfranciscensis TMW 1.2138 [MIXY]
127299
127225
-
Thr
CGT
[ENA]
¡û
>W1910748667
MIXZ01000006
Bacillota
Lactobacillus sanfranciscensis TMW 1.2139 [MIXZ]
40944
40870
-
Thr
CGT
[ENA]
¡û
>W1910748719
MIYA01000023
Bacillota
Lactobacillus sanfranciscensis TMW 1.2140 [MIYA]
127297
127223
-
Thr
CGT
[ENA]
¡û
>W1910748759
MIYB01000023
Bacillota
Lactobacillus sanfranciscensis TMW 1.2141 [MIYB]
325
399
+
Thr
CGT
[ENA]
¡û
>W1910748816
MIYC01000005
Bacillota
Lactobacillus sanfranciscensis TMW 1.2142 [MIYC]
40944
40870
-
Thr
CGT
[ENA]
¡û
>W1910748874
MIYD01000023
Bacillota
Lactobacillus sanfranciscensis TMW 1.726 [MIYD]
127299
127225
-
Thr
CGT
[ENA]
¡û
>W1910748927
MIYE01000023
Bacillota
Lactobacillus sanfranciscensis TMW 1.54 [MIYE]
458
532
+
Thr
CGT
[ENA]
¡û
>W1910748982
MIYF01000024
Bacillota
Lactobacillus sanfranciscensis TMW 1.1597 [MIYF]
322
396
+
Thr
CGT
[ENA]
¡û
>W1910749038
MIYG01000025
Bacillota
Lactobacillus sanfranciscensis TMW 1.1150 [MIYG]
458
532
+
Thr
CGT
[ENA]
¡û
>W1910749081
MIYH01000034
Bacillota
Lactobacillus sanfranciscensis TMW 1.392 [MIYH]
97444
97370
-
Thr
CGT
[ENA]
¡û
>W1910749134
MIYJ01000014
Bacillota
Lactobacillus sanfranciscensis DSM 20451 TMW 1.53 [MIYJ]
268
342
+
Thr
CGT
[ENA]
¡û
>W1810789144
QRFO01000024
Bacillota
Fructilactobacillus sanfranciscensis JCM 5668 [QRFO]
4198
4124
-
Thr
CGT
[ENA]
¡û
>W2010880406
MIXX01000004
Bacillota
Lactobacillus sanfranciscensis TMW 1.2137 [MIXX]
47563
47489
-
Thr
CGT
[ENA]
¡û
>W2010880467
MIXY01000023
Bacillota
Lactobacillus sanfranciscensis TMW 1.2138 [MIXY]
127299
127225
-
Thr
CGT
[ENA]
¡û
>W2010880507
MIXZ01000006
Bacillota
Lactobacillus sanfranciscensis TMW 1.2139 [MIXZ]
40944
40870
-
Thr
CGT
[ENA]
¡û
>W2010880559
MIYA01000023
Bacillota
Lactobacillus sanfranciscensis TMW 1.2140 [MIYA]
127297
127223
-
Thr
CGT
[ENA]
¡û
>W2010880599
MIYB01000023
Bacillota
Lactobacillus sanfranciscensis TMW 1.2141 [MIYB]
325
399
+
Thr
CGT
[ENA]
¡û
>W2010880656
MIYC01000005
Bacillota
Lactobacillus sanfranciscensis TMW 1.2142 [MIYC]
40944
40870
-
Thr
CGT
[ENA]
¡û
>W2010880714
MIYD01000023
Bacillota
Lactobacillus sanfranciscensis TMW 1.726 [MIYD]
127299
127225
-
Thr
CGT
[ENA]
¡û
>W2010880767
MIYE01000023
Bacillota
Lactobacillus sanfranciscensis TMW 1.54 [MIYE]
458
532
+
Thr
CGT
[ENA]
¡û
>W2010880822
MIYF01000024
Bacillota
Lactobacillus sanfranciscensis TMW 1.1597 [MIYF]
322
396
+
Thr
CGT
[ENA]
¡û
>W2010880878
MIYG01000025
Bacillota
Lactobacillus sanfranciscensis TMW 1.1150 [MIYG]
458
532
+
Thr
CGT
[ENA]
¡û
>W2010880921
MIYH01000034
Bacillota
Lactobacillus sanfranciscensis TMW 1.392 [MIYH]
97444
97370
-
Thr
CGT
[ENA]
¡û
>W2010880974
MIYJ01000014
Bacillota
Lactobacillus sanfranciscensis DSM 20451 TMW 1.53 [MIYJ]
268
342
+
Thr
CGT
[ENA]
¡û
>W2011241077
QFCR01000008
Bacillota
Lactobacillus sanfranciscensis Ah4 [QFCR]
172
246
+
Thr
CGT
[ENA]
¡û
>W2011250582
QGEE01000040
Bacillota
Lactobacillus sanfranciscensis Gs2 [QGEE]
228
302
+
Thr
CGT
[ENA]
¡û
>W2011250636
QGEF01000043
Bacillota
Lactobacillus sanfranciscensis Gs9 [QGEF]
234
308
+
Thr
CGT
[ENA]
¡û
>W2011250812
QGHM01000034
Bacillota
Lactobacillus sanfranciscensis Sd1-3 [QGHM]
4078
4004
-
Thr
CGT
[ENA]
¡û
>W2011267525
QKWR01000042
Bacillota
Lactobacillus sanfranciscensis Ts9 [QKWR]
240
314
+
Thr
CGT
[ENA]
¡û
>W2011461028
RPFX01000042
Bacillota
Lactobacillus sanfranciscensis Ls-1001 [RPFX]
264
338
+
Thr
CGT
[ENA]
¡û
>W2011533486
SCEQ01000003
Bacillota
Lactobacillus sanfranciscensis TMW11730 [SCEQ]
97330
97256
-
Thr
CGT
[ENA]
¡û
>W2011533533
SCER01000004
Bacillota
Lactobacillus sanfranciscensis TMW11470 [SCER]
268
342
+
Thr
CGT
[ENA]
¡û
>W2011533581
SCES01000005
Bacillota
Lactobacillus sanfranciscensis TMW11304 [SCES]
76077
76003
-
Thr
CGT
[ENA]
¡û
>W2011533616
SCET01000007
Bacillota
Lactobacillus sanfranciscensis TMW11221 [SCET]
146
220
+
Thr
CGT
[ENA]
¡û
>W2011533654
SCEU01000006
Bacillota
Lactobacillus sanfranciscensis TMW11154 [SCEU]
57979
57905
-
Thr
CGT
[ENA]
¡û
>W2011533688
SCEV01000007
Bacillota
Lactobacillus sanfranciscensis TMW11152 [SCEV]
191
265
+
Thr
CGT
[ENA]
¡û
>W2011533738
SCEW01000003
Bacillota
Lactobacillus sanfranciscensis TMW12134 [SCEW]
458
532
+
Thr
CGT
[ENA]
¡û
>W2011533759
SCEY01000005
Bacillota
Lactobacillus sanfranciscensis TMW1907 [SCEY]
75956
75882
-
Thr
CGT
[ENA]
¡û
>W2011533807
SCEZ01000008
Bacillota
Lactobacillus sanfranciscensis TMW1640 [SCEZ]
57813
57739
-
Thr
CGT
[ENA]
¡û
>C241098260
CP045563
Bacillota
Fructilactobacillus sanfranciscensis LS451 [CP045563]
410415
410489
+
Thr
CGT
-
¡û
>C11113659
CP002461
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.1304 [CP002461]
427353
427427
+
Thr
CGT
[Ensembl]
¡û
>W1610031041
AYYM01000039
Bacillota
Fructilactobacillus sanfranciscensis DSM 20451 [AYYM]
4002
3928
-
Thr
CGT
[ENA]
¡û
>W1710027993
AYYM01000039
Bacillota
Fructilactobacillus sanfranciscensis DSM 20451 [AYYM]
4002
3928
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK