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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282595 (12 seq.)
>W1711317495
MAXI01000111
Thermodesulfobacteriota
Desulfovibrio sp. S3730MH75 [MAXI]
9535
9610
+
Met
CAT
[ENA]
¡û
>W131236076
AUMA01000001
Thermodesulfobacteriota
Desulfovibrio aminophilus DSM 12254 [AUMA]
113692
113617
-
Met
CAT
[ENA]
¡û
>W131224565
AUCX01000006
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
20349
20274
-
Met
CAT
[ENA]
¡û
>W131224789
AUDB01000002
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
19966
19891
-
Met
CAT
[ENA]
¡û
>WENV183709441
PDWI01028212
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3150
3225
+
Ile2
CAT
[ENA]
¡û
>WENV170645379
JMSV01001659
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
1001
1076
+
Met
CAT
[ENA]
¡û
>WENV170699783
LGVF01660003
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
390
315
-
Met
CAT
[ENA]
¡û
>W141779024
JONL01000008
Thermodesulfobacteriota
Maridesulfovibrio frigidus DSM 17176 [JONL]
224696
224771
+
Met
CAT
[ENA]
¡û
>W09117981
ACCN01000002
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
20214
20139
-
Met
CAT
[ENA]
¡û
>C09104241
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3756300
3756225
-
Met
CAT
[Ensembl]
¡û
>C241053632
CP040751
Thermodesulfobacteriota
Salidesulfovibrio onnuriiensis IOR2 [CP040751]
198928
198853
-
Ile2
CAT
-
¡û
>C131018143
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
690572
690497
-
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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