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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339967 (41 seq.)
>A171007184
HE964772
Euryarchaeota
Methanoculleus bourgensis MS2 MS2T [HE964772]
569812
569883
+
Cys
GCA
-
¡û
>A171007541
LT158599
Euryarchaeota
Methanoculleus bourgensis [LT158599]
576371
576442
+
Cys
GCA
-
¡û
>A171007609
LT549891
Euryarchaeota
Methanoculleus bourgensis [LT549891]
804581
804652
+
Cys
GCA
-
¡û
>WENV180098226
MTBK01234417
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
9
80
+
Cys
GCA
[ENA]
¢þ
>WENV180098611
MTBK01257280
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
4753
4824
+
Cys
GCA
[ENA]
¢þ
>WENV180318076
OBKL01053282
[OBKL] soil metagenome; Alaskan Permafrost
146
217
+
Cys
GCA
[ENA]
¢þ
>WENV181230051
OFEK01000225
[OFEK] activated sludge metagenome; Anaerobic digester
34824
34753
-
Cys
GCA
[ENA]
¢þ
>WENV181230590
OFEK01001746
[OFEK] activated sludge metagenome; Anaerobic digester
402
473
+
Cys
GCA
[ENA]
¢þ
>WENV181359223
OFMW01000520
[OFMW] sediment metagenome; Lake sediment
300
229
-
Cys
GCA
[ENA]
¢þ
>WENV181361442
OFNX01000025
[OFNX] sediment metagenome; Lake sediment
337
266
-
Cys
GCA
[ENA]
¢þ
>WENV181361483
OFNY01003097
[OFNY] sediment metagenome; Lake sediment
398
469
+
Cys
GCA
[ENA]
¢þ
>WENV181361496
OFNZ01000597
[OFNZ] sediment metagenome; Lake sediment
419
490
+
Cys
GCA
[ENA]
¢þ
>WENV181364452
OFOV01002824
[OFOV] sediment metagenome; Lake sediment
346
417
+
Cys
GCA
[ENA]
¢þ
>WENV181412868
OGCK01012617
[OGCK] hot springs metagenome; hot spring sediment
1564
1635
+
Cys
GCA
[ENA]
¢þ
>At0696
CP000780
Euryarchaeota
Methanoregula boonei 6A8 [CP000780]
2247272
2247201
-
Cys
GCA
[Ensembl]
¡û
>At1289
CP000562
Euryarchaeota
Methanoculleus marisnigri JR1 [CP000562]
1819352
1819281
-
Cys
GCA
[Ensembl]
¡û
>WENV170562438
CZCB01002793
[CZCB] anaerobic digester metagenome; anaerobic digester
675
603
-
Cys
GCA
[ENA]
¢þ
>WENV170562722
CZCB01004876
[CZCB] anaerobic digester metagenome; anaerobic digester
565
494
-
Cys
GCA
[ENA]
¢þ
>WENV170563101
CZCB01010011
[CZCB] anaerobic digester metagenome; anaerobic digester
140
213
+
Cys
GCA
[ENA]
¢þ
>WENV170670264
LAHT01000719
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
77
6
-
Cys
GCA
[ENA]
¢þ
>WENV170683977
LFRM01013243
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
903
832
-
Cys
GCA
[ENA]
¢þ
>WENV170685624
LFRM01102032
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4289
4216
-
Cys
GCA
[ENA]
¢þ
>WENV170715276
LNQE01001228
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
3534
3463
-
Cys
GCA
[ENA]
¢þ
>WENV170718411
LSQX01074624
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3438
3509
+
Cys
GCA
[ENA]
¢þ
>WENV170718883
LSQX01093623
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3324
3395
+
Cys
GCA
[ENA]
¢þ
>WENV170968588
MTKW01011793
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5533
5604
+
Cys
GCA
[ENA]
¢þ
>W1910211664
FMID01000004
Euryarchaeota
Methanoculleus chikugoensis [FMID]
70143
70072
-
Cys
GCA
[ENA]
¡û
>W1910226962
FNFT01000004
Euryarchaeota
Methanoculleus thermophilus DSM 2373 [FNFT]
77165
77237
+
Cys
GCA
[ENA]
¡û
>W1910226982
FNFT01000012
Euryarchaeota
Methanoculleus thermophilus DSM 2373 [FNFT]
5082
5155
+
Cys
GCA
[ENA]
¡û
>W1910572540
JMIO01000103
Euryarchaeota
Methanoculleus sp. MH98A [JMIO]
3385
3314
-
Cys
GCA
[ENA]
¡û
>W1910583819
JXOJ01000002
Euryarchaeota
Methanoculleus sediminis S3Fa [JXOJ]
145503
145432
-
Cys
GCA
[ENA]
¡û
>W1910617163
LHQS01000002
Euryarchaeota
Methanoculleus taiwanensis CYW4 [LHQS]
96
167
+
Cys
GCA
[ENA]
¡û
>W1910617187
LHQS01000004
Euryarchaeota
Methanoculleus taiwanensis CYW4 [LHQS]
165110
165039
-
Cys
GCA
[ENA]
¡û
>W1910783539
MPOY01000429
Euryarchaeota
Methanoculleus sp. EBM-46 [MPOY]
2442
2513
+
Cys
GCA
[ENA]
¡û
>W1911675899
QGMY01000002
Euryarchaeota
Methanospirillum lacunae Ki8-1 [QGMY]
981263
981191
-
Cys
GCA
[ENA]
¡û
>W1610000249
AASI01000001
Euryarchaeota
Methanoculleus marisnigri JR1 [AASI]
199778
199707
-
Cys
GCA
[ENA]
¡û
>W1610063039
BCNX01000009
Euryarchaeota
Methanoculleus thermophilus CR-1 [BCNX]
124473
124400
-
Cys
GCA
[ENA]
¡û
>W1610063049
BCNY01000004
Euryarchaeota
Methanoculleus horonobensis T10 [BCNY]
221
292
+
Cys
GCA
[ENA]
¡û
>W1610605001
LFRN01000009
Euryarchaeota
Candidatus Methanoculleus thermohydrogenotrophicum DTU006 [LFRN]
903
832
-
Cys
GCA
[ENA]
¡û
>W1610605054
LFRO01000025
Euryarchaeota
Methanoculleus sp. DTU007 [LFRO]
4289
4216
-
Cys
GCA
[ENA]
¡û
>W1610946082
LUYK01000198
Euryarchaeota
Methanomicrobiales archaeon Methan_07 [LUYK]
1161
1232
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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