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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.449046 (85 seq.)
>W1710809765
LKEU01000033
Bacillota
Acetobacterium wieringae [LKEU]
28923
28850
-
Gly
TCC
[ENA]
¡û
>W1710931148
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
6093
6166
+
Gly
TCC
[ENA]
¡û
>W1710931165
LOHE01000043
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
205
278
+
Gly
TCC
[ENA]
¡û
>W1710931175
LOHE01000044
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
21147
21074
-
Gly
TCC
[ENA]
¡û
>W1711360508
MDJR01000004
Bacillota
Caloranaerobacter ferrireducens [MDJR]
366
293
-
Gly
TCC
[ENA]
¡û
>W1711360534
MDJR01000010
Bacillota
Caloranaerobacter ferrireducens [MDJR]
30627
30700
+
Gly
TCC
[ENA]
¡û
>W08006067
ABIL02000006
Bacillota
Anaerofustis stercorihominis DSM 17244 [ABIL]
1111288
1111218
-
Gly
TCC
[ENA]
¡û
>WENV183707164
PDWI01007151
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
13413
13340
-
Gly
TCC
[ENA]
¡û
>WENV183709074
PDWI01023483
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
26
99
+
Gly
TCC
[ENA]
¡û
>WENV183709706
PDWI01032303
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
98
25
-
Gly
TCC
[ENA]
¡û
>WENV183718737
PDWJ01006251
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
9262
9335
+
Gly
TCC
[ENA]
¡û
>WENV183718800
PDWJ01006630
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
8927
8854
-
Gly
TCC
[ENA]
¡û
>WENV183718964
PDWJ01008161
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
202
275
+
Gly
TCC
[ENA]
¡û
>WENV170562221
CZCB01001440
[CZCB] anaerobic digester metagenome; anaerobic digester
77902
77829
-
Gly
TCC
[ENA]
¡û
>WENV170685250
LFRM01080531
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
10980
10907
-
Gly
CCC
[ENA]
¡û
>WENV170687830
LFRM01212840
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1691
1618
-
Gly
TCC
[ENA]
¡û
>WENV170692717
LGOV01024455
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
27
100
+
Gly
TCC
[ENA]
¡û
>WENV170697557
LGVF01154848
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
420
493
+
Gly
TCC
[ENA]
¡û
>WENV170967759
MTKW01003253
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
243
316
+
Gly
TCC
[ENA]
¡û
>WENV170968650
MTKW01012602
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3500
3573
+
Gly
TCC
[ENA]
¡û
>WENV170968656
MTKW01012602
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4028
4101
+
Gly
TCC
[ENA]
¡û
>C193001125
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3776334
3776407
+
Gly
TCC
-
¡û
>C193003658
LR215983
Bacillota
Eubacterium limosum [LR215983]
267318
267391
+
Gly
TCC
-
¡û
>W1810721104
QNRS01000023
Bacillota
Garciella nitratireducens GHB3 [QNRS]
21184
21111
-
Gly
TCC
[ENA]
¡û
>W1810721111
QNRS01000023
Bacillota
Garciella nitratireducens GHB3 [QNRS]
20575
20502
-
Gly
TCC
[ENA]
¡û
>W1810889486
QUSM01000005
Bacillota
Anaerofustis stercorihominis AM25-6 [QUSM]
109927
110000
+
Gly
TCC
[ENA]
¡û
>W2010262924
CABKNJ020000001
Bacillota
Anaerofustis stercorihominis [CABKNJ]
1111288
1111215
-
Gly
TCC
[ENA]
¡û
>W2010363155
CADDZD010000163
Bacillota
Clostridia bacterium [CADDZD]
1804
1731
-
Gly
TCC
[ENA]
¡û
>W2011669796
SPHL01000004
Bacillota
Anaerofustis stercorihominis 1001271st1_D3 [SPHL]
67952
67879
-
Gly
TCC
[ENA]
¡û
>W2011957561
UZAQ01000006
Bacillota
Senegalia massiliensis SIT17 [UZAQ]
25136
25063
-
Gly
TCC
[ENA]
¡û
>W2012131260
VSLA01000005
Bacillota
Acetobacterium wieringae JM [VSLA]
77972
78045
+
Gly
TCC
[ENA]
¡û
>W2030004834
CABJAI020000001
Bacillota
Eubacterium callanderi [CABJAI]
170231
170304
+
Gly
TCC
[ENA]
¡û
>W2030004993
CABJDW020000007
Bacillota
Eubacterium limosum [CABJDW]
254002
254075
+
Gly
TCC
[ENA]
¡û
>W2030015289
JACCKS010000010
Bacillota
Eubacterium callanderi AMC0717 [JACCKS]
156332
156405
+
Gly
TCC
[ENA]
¡û
>W2030037596
RXYA01000006
Bacillota
Acetobacterium paludosum DSM 8237 [RXYA]
206620
206693
+
Gly
TCC
[ENA]
¡û
>W2030037602
RXYD01000002
Bacillota
Alkalibaculum bacchi DSM 221123 [RXYD]
267791
267864
+
Gly
TCC
[ENA]
¡û
>W2030052534
VUMP01000007
Bacillota
Eubacterium sp. BL-380-WT-2B [VUMP]
20869
20796
-
Gly
TCC
[ENA]
¡û
>W2110074893
CABIIK010000027
Bacillota
Acetobacterium wieringae [CABIIK]
28677
28604
-
Gly
TCC
[ENA]
¡û
>W2110350008
JADNEO010000004
Bacillota
Anaerofustis stercorihominis 1001271B_150615_D3 [JADNEO]
67952
67879
-
Gly
TCC
[ENA]
¡û
>W2110358911
JADNRK010000017
Bacillota
Alkalibacter sp. M17 DMB [JADNRK]
19606
19533
-
Gly
TCC
[ENA]
¡û
>C201216596
CP048617
Bacillota
Caloranaerobacter azorensis T3-1 [CP048617]
716
789
+
Gly
TCC
-
¡û
>C201216613
CP048617
Bacillota
Caloranaerobacter azorensis T3-1 [CP048617]
2822
2895
+
Gly
TCC
-
¡û
>C201216640
CP048617
Bacillota
Caloranaerobacter azorensis T3-1 [CP048617]
2526848
2526921
+
Gly
TCC
-
¡û
>C201216649
CP048617
Bacillota
Caloranaerobacter azorensis T3-1 [CP048617]
1707992
1707919
-
Gly
TCC
-
¡û
>C211290889
CP071444
Bacillota
Alkalibacter sp. ES005 [CP071444]
6804
6877
+
Gly
CCC
-
¡û
>C211290898
CP071444
Bacillota
Alkalibacter sp. ES005 [CP071444]
1948783
1948856
+
Gly
TCC
-
¡û
>C231248016
CP087994
Bacillota
Acetobacterium wieringae Y [CP087994]
336800
336873
+
Gly
TCC
-
¡û
>C231394983
CP097897
Bacillota
Acetobacterium wieringae CH1 [CP097897]
292342
292415
+
Gly
TCC
-
¡û
>C231611802
CP118523
Bacillota
Clostridiaceae bacterium M8S5 [CP118523]
1417009
1417082
+
Gly
TCC
-
¡û
>C231611832
CP118523
Bacillota
Clostridiaceae bacterium M8S5 [CP118523]
3969491
3969418
-
Gly
TCC
-
¡û
>C231611851
CP118523
Bacillota
Clostridiaceae bacterium M8S5 [CP118523]
2813583
2813510
-
Gly
TCC
-
¡û
>C241015715
AP028654
Bacillota
Helicovermis profundi S502 [AP028654]
1133070
1133143
+
Gly
TCC
-
¡û
>C241015743
AP028654
Bacillota
Helicovermis profundi S502 [AP028654]
2600150
2600077
-
Gly
TCC
-
¡û
>W2130004178
CACRTR010000012
Bacillota
Eubacterium limosum [CACRTR]
20828
20755
-
Gly
TCC
[ENA]
¡û
>W2130012239
JABFAG010000025
Bacillota
Eubacterium callanderi GGCC_0197 [JABFAG]
21252
21179
-
Gly
TCC
[ENA]
¡û
>W2130021257
JADMVE010000002
Bacillota
Eubacterium sp. 1001713B170207_170306_E7 [JADMVE]
540296
540369
+
Gly
TCC
[ENA]
¡û
>W2130022302
JADNNR010000004
Bacillota
Eubacterium maltosivorans BSD2780120874b_170522_C8 [JADNNR]
20814
20741
-
Gly
TCC
[ENA]
¡û
>W2130036800
JAHLOB010000001
Bacillota
Eubacterium callanderi N72 [JAHLOB]
21178
21105
-
Gly
TCC
[ENA]
¡û
>W2130042283
JAJCHU010000020
Bacillota
Eubacterium callanderi DFI.4.61 [JAJCHU]
22972
23045
+
Gly
TCC
[ENA]
¡û
>W2130042462
JAJCKW010000021
Bacillota
Eubacterium callanderi DFI.4.63B [JAJCKW]
22972
23045
+
Gly
TCC
[ENA]
¡û
>W2130042558
JAJCMN010000022
Bacillota
Eubacterium callanderi DFI.4.62 [JAJCMN]
22972
23045
+
Gly
TCC
[ENA]
¡û
>W2130045002
WJBD01000017
Bacillota
Acetobacterium paludosum DER-2019 [WJBD]
75623
75696
+
Gly
TCC
[ENA]
¡û
>C11300214
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
922851
922924
+
Gly
TCC
[Ensembl]
¡û
>W11301100
AEQN01000009
Bacillota
Pseudoramibacter alactolyticus ATCC 23263 [AEQN]
14982
15055
+
Gly
TCC
[ENA]
¡û
>W1511705893
LGSS01000023
Bacillota
Gottschalkia purinilytica DSM 1384 [LGSS]
338
411
+
Gly
TCC
[ENA]
¡û
>W1511705912
LGSS01000047
Bacillota
Gottschalkia purinilytica DSM 1384 [LGSS]
1376
1303
-
Gly
TCC
[ENA]
¡û
>C121003883
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
357306
357379
+
Gly
TCC
[Ensembl]
¡û
>W1610039919
AZTB01000027
Bacillota
Caloranaerobacter azorensis H53214 [AZTB]
11556
11483
-
Gly
TCC
[ENA]
¡û
>W1610039947
AZTB01000130
Bacillota
Caloranaerobacter azorensis H53214 [AZTB]
882
809
-
Gly
TCC
[ENA]
¡û
>W1610606679
LFTD01000032
Bacillota
Clostridiales bacterium DTU036 [LFTD]
10980
10907
-
Gly
CCC
[ENA]
¡û
>W1610607028
LFTN01000119
Bacillota
Clostridiales bacterium DTU087 [LFTN]
1691
1618
-
Gly
TCC
[ENA]
¡û
>W1610788690
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
6093
6166
+
Gly
TCC
[ENA]
¡û
>W1610788707
LOHE01000043
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
205
278
+
Gly
TCC
[ENA]
¡û
>W1610788717
LOHE01000044
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
21147
21074
-
Gly
TCC
[ENA]
¡û
>W1730008780
FNJF01000028
Bacillota
Eubacterium maltosivorans limosum [FNJF]
20986
20913
-
Gly
TCC
[ENA]
¡û
>W1710037064
AZTB01000027
Bacillota
Caloranaerobacter azorensis H53214 [AZTB]
11556
11483
-
Gly
TCC
[ENA]
¡û
>W1710037092
AZTB01000130
Bacillota
Caloranaerobacter azorensis H53214 [AZTB]
882
809
-
Gly
TCC
[ENA]
¡û
>W1710582320
FQTU01000018
Bacillota
Alkalibacter saccharofermentans DSM 14828 [FQTU]
740
667
-
Gly
TCC
[ENA]
¡û
>W1710586914
FQXO01000058
Bacillota
Caloranaerobacter azorensis DSM 13643 [FQXO]
7580
7653
+
Gly
TCC
[ENA]
¡û
>W1710586932
FQXO01000147
Bacillota
Caloranaerobacter azorensis DSM 13643 [FQXO]
361
434
+
Gly
TCC
[ENA]
¡û
>W1710588556
FQZL01000031
Bacillota
Dethiosulfatibacter aminovorans DSM 17477 [FQZL]
47456
47383
-
Gly
TCC
[ENA]
¡û
>W1710600876
FUWV01000017
Bacillota
Garciella nitratireducens DSM 15102 [FUWV]
6727
6800
+
Gly
TCC
[ENA]
¡û
>W1710600883
FUWV01000017
Bacillota
Garciella nitratireducens DSM 15102 [FUWV]
7336
7409
+
Gly
TCC
[ENA]
¡û
>W1710727966
LFTD01000032
Bacillota
Clostridiales bacterium DTU036 [LFTD]
10980
10907
-
Gly
CCC
[ENA]
¡û
>W1710728315
LFTN01000119
Bacillota
Clostridiales bacterium DTU087 [LFTN]
1691
1618
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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