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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4672 (116 seq.)
>W1710861724
LMDV01000009
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
260511
260418
-
Ser
GCT
[ENA]
¡û
>W1710863702
LMFI01000010
Actinomycetota
Nocardioides sp. Root140 [LMFI]
1627759
1627850
+
Ser
GCT
[ENA]
¡û
>W1710864902
LMGG01000001
Actinomycetota
Nocardioides sp. Root151 [LMGG]
1548139
1548048
-
Ser
GCT
[ENA]
¡û
>W1710865621
LMGV01000001
Actinomycetota
Nocardioides sp. Root614 [LMGV]
2165941
2165848
-
Ser
GCT
[ENA]
¡û
>W1710866315
LMHJ01000001
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
2212392
2212299
-
Ser
GCT
[ENA]
¡û
>W1710867122
LMIA01000007
Actinomycetota
Nocardioides sp. Root190 [LMIA]
123806
123899
+
Ser
GCT
[ENA]
¡û
>W1710867744
LMIN01000009
Actinomycetota
Nocardioides sp. Root224 [LMIN]
260510
260417
-
Ser
GCT
[ENA]
¡û
>W1710867827
LMIP01000011
Actinomycetota
Nocardioides sp. Root79 [LMIP]
692958
692867
-
Ser
GCT
[ENA]
¡û
>W1710868015
LMIT01000010
Actinomycetota
Nocardioides sp. Root240 [LMIT]
784445
784354
-
Ser
GCT
[ENA]
¡û
>W1710880712
LMSN01000016
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
337185
337092
-
Ser
GCT
[ENA]
¡û
>W1710880871
LMSQ01000002
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
14747
14656
-
Ser
GCT
[ENA]
¡û
>W1710881056
LMSU01000001
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
1724313
1724406
+
Ser
GCT
[ENA]
¡û
>W131161610
AQXW01000004
Actinomycetota
Demetria terragena DSM 11295 [AQXW]
2297365
2297458
+
Ser
GCT
[ENA]
¡û
>W1711126714
LUPF01000062
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
5328
5421
+
Ser
GCT
[ENA]
¡û
>W1711126791
LUPH01000302
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
1855
1948
+
Ser
GCT
[ENA]
¡û
>W1711126826
LUPI01000064
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
6182
6275
+
Ser
GCT
[ENA]
¡û
>W1711126835
LUPJ01000009
Actinomycetota
Nocardioides sp. REDSEA-S31_B4 [LUPJ]
1856
1949
+
Ser
GCT
[ENA]
¡û
>W1711126885
LUPK01000026
Actinomycetota
Nocardioides sp. REDSEA-S33_B3 [LUPK]
6267
6360
+
Ser
GCT
[ENA]
¡û
>W1711126919
LUPL01000007
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
39467
39374
-
Ser
GCT
[ENA]
¡û
>W1711126996
LUPM01000436
Actinomycetota
Nocardioides sp. REDSEA-S36_B10 [LUPM]
1837
1930
+
Ser
GCT
[ENA]
¡û
>W1711127008
LUPN01000118
Actinomycetota
Nocardioides sp. REDSEA-S37_B12 [LUPN]
3276
3369
+
Ser
GCT
[ENA]
¡û
>W1711127047
LUPO01000018
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
6267
6360
+
Ser
GCT
[ENA]
¡û
>W1711127105
LUPP01000078
Actinomycetota
Nocardioides sp. REDSEA-S40_B4 [LUPP]
15810
15717
-
Ser
GCT
[ENA]
¡û
>W1711127124
LUPQ01000037
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
15818
15725
-
Ser
GCT
[ENA]
¡û
>W131190768
ASEP01000008
Actinomycetota
Nocardioides sp. CF8 [ASEP]
26216
26311
+
Ser
GCT
[ENA]
¡û
>W131227878
AUFN01000009
Actinomycetota
Nocardioides alkalitolerans DSM 16699 [AUFN]
495520
495613
+
Ser
GCT
[ENA]
¡û
>WENV180019360
FTBU01001922
[FTBU] metagenome; soil
2736
2827
+
Ser
GCT
[ENA]
¢þ
>WENV180304736
OBJI01335361
[OBJI] soil metagenome; soil
110
203
+
Ser
GCT
[ENA]
¢þ
>WENV180690987
OCZS010043713
[OCZS] soil metagenome; soil
567
660
+
Ser
GCT
[ENA]
¢þ
>WENV181222870
OFDC01000437
[OFDC] hot springs metagenome; Water
820
913
+
Ser
GCT
[ENA]
¢þ
>WENV181307879
OFIS01000012
[OFIS] sludge metagenome; sludge
248454
248361
-
Ser
GCT
[ENA]
¢þ
>W141277562
JAER01000049
Actinomycetota
Nocardioides sp. J54 [JAER]
22344
22435
+
Ser
GCT
[ENA]
¡û
>WENV183748033
PPFU01007716
[PPFU] hypolithon metagenome; Antarctic Hypolithon
120
211
+
Ser
GCT
[ENA]
¢þ
>WENV170010809
APMI01029836
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2234
2327
+
Ser
GCT
[ENA]
¢þ
>WENV170012012
APMI01110832
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
587
494
-
Ser
GCT
[ENA]
¢þ
>WENV170229707
CEQG01151175
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1133
1226
+
Ser
GCT
[ENA]
¢þ
>WENV170373207
CETS01206708
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
466
373
-
Ser
GCT
[ENA]
¢þ
>WENV170571900
FLOH01000366
[FLOH] marine metagenome; water
32355
32264
-
Ser
GCT
[ENA]
¢þ
>WENV170727575
LULE01000535
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
15810
15717
-
Ser
GCT
[ENA]
¢þ
>WENV170727903
LULE01004155
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
1963
1870
-
Ser
GCT
[ENA]
¢þ
>WENV170728690
LULF01000176
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
6267
6360
+
Ser
GCT
[ENA]
¢þ
>WENV170729946
LULG01004643
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
640
733
+
Ser
GCT
[ENA]
¢þ
>WENV170730625
LULH01000734
[LULH] marine metagenome; Red Sea water column Station 169 - depth 100m
3276
3369
+
Ser
GCT
[ENA]
¢þ
>WENV170731421
LULI01000243
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
1837
1930
+
Ser
GCT
[ENA]
¢þ
>WENV170734239
LULK01002633
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
6165
6258
+
Ser
GCT
[ENA]
¢þ
>WENV170735285
LULL01000536
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
6267
6360
+
Ser
GCT
[ENA]
¢þ
>WENV170736865
LULM01043609
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
173
80
-
Ser
GCT
[ENA]
¢þ
>WENV170737033
LULN01001248
[LULN] marine metagenome; Red Sea water column Station 149 - depth 100m
1856
1949
+
Ser
GCT
[ENA]
¢þ
>WENV170737461
LULO01000170
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
6182
6275
+
Ser
GCT
[ENA]
¢þ
>WENV170739075
LULP01019483
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
5
98
+
Ser
GCT
[ENA]
¢þ
>WENV170739298
LULQ01000151
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
1855
1948
+
Ser
GCT
[ENA]
¢þ
>WENV170740285
LULR01004380
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
3479
3386
-
Ser
GCT
[ENA]
¢þ
>WENV170743531
LULW01000364
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
5328
5421
+
Ser
GCT
[ENA]
¢þ
>WENV170746072
LULZ01006698
[LULZ] marine metagenome; Red Sea water column Station 91 - depth 100m
1374
1281
-
Ser
GCT
[ENA]
¢þ
>WENV170758895
LUMS01000222
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
15556
15463
-
Ser
GCT
[ENA]
¢þ
>WENV170760788
LUMU01000178
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
15818
15725
-
Ser
GCT
[ENA]
¢þ
>WENV170761935
LUMW01000137
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
6267
6360
+
Ser
GCT
[ENA]
¢þ
>C181200527
CP031447
Actinomycetota
Austwickia chelonae LK16-18 [CP031447]
3099493
3099400
-
Ser
GCT
-
¡û
>C191104175
CP033324
Actinomycetota
Nocardioides pantholopis 603 [CP033324]
99950
100043
+
Ser
GCT
-
¡û
>C191159448
CP038436
Actinomycetota
Nocardioides seonyuensis MMS17-SY207-3 [CP038436]
1397338
1397429
+
Ser
GCT
-
¡û
>C191187013
CP041146
Actinomycetota
Nocardioides humi DCY24 [CP041146]
2728064
2727971
-
Ser
GCT
-
¡û
>W141564331
JIAR01000011
Actinomycetota
Nocardioides sp. URHA0020 [JIAR]
45990
45897
-
Ser
GCT
[ENA]
¡û
>W141564501
JIAV01000012
Actinomycetota
Nocardioides sp. URHA0032 [JIAV]
76022
76115
+
Ser
GCT
[ENA]
¡û
>W1911672105
QGDD01000003
Actinomycetota
Nocardioides silvaticus CCTCC AB 2018079 [QGDD]
323492
323400
-
Ser
GCT
[ENA]
¡û
>W1911768157
QXGH01000021
Actinomycetota
Nocardioides immobilis CCTCC AB 2017083 [QXGH]
57845
57936
+
Ser
GCT
[ENA]
¡û
>W1911798418
QYRP01000002
Actinomycetota
Nocardioides cavernaquae K1W22B-1 [QYRP]
1293523
1293616
+
Ser
GCT
[ENA]
¡û
>W1810201597
POAG01000024
Actinomycetota
Nocardioides sp. 616 [POAG]
132028
132119
+
Ser
GCT
[ENA]
¡û
>W1810427493
PYXZ01000001
Actinomycetota
Nocardioides currus IB-3 [PYXZ]
866110
866205
+
Ser
GCT
[ENA]
¡û
>W1810462639
PZYX01000014
Actinomycetota
Nocardioides allogilvus KCTC 49020 [PZYX]
41379
41474
+
Ser
GCT
[ENA]
¡û
>W1810462656
PZYY01000001
Actinomycetota
Nocardioides terrigena KCTC 19217 [PZYY]
14273
14180
-
Ser
GCT
[ENA]
¡û
>W1810462727
PZYZ01000004
Actinomycetota
Nocardioides sediminis KCTC 19271 [PZYZ]
236127
236034
-
Ser
GCT
[ENA]
¡û
>W1810539906
QDGZ01000005
Actinomycetota
Nocardioides gansuensis WSJ-1 [QDGZ]
204953
204861
-
Ser
GCT
[ENA]
¡û
>W1810577873
QEOO01000016
Actinomycetota
Nocardioides speluncae YIM ART13 [QEOO]
324882
324790
-
Ser
GCT
[ENA]
¡û
>W1810594931
QGDN01000001
Actinomycetota
Branchiibius hedensis DSM 22951 [QGDN]
3616575
3616482
-
Ser
GCT
[ENA]
¡û
>W1810626162
QHKX01000001
Actinomycetota
Nocardioides solisilvae Ka25 [QHKX]
453113
453206
+
Ser
GCT
[ENA]
¡û
>W1810697602
QLVD01000026
Actinomycetota
Ornithinimicrobium murale DSM 22056 [QLVD]
31074
30982
-
Ser
GCT
[ENA]
¡û
>C151077132
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
5163524
5163431
-
Ser
GCT
-
¡û
>W1510060519
CCXJ01000474
Actinomycetota
Nocardioides massiliensis GD13 [CCXJ]
2243
2334
+
Ser
GCT
[ENA]
¡û
>W1511568095
LAIR01000002
Actinomycetota
Luteipulveratus halotolerans C296001 [LAIR]
65100
65193
+
Ser
GCT
[ENA]
¡û
>C161082861
CP015079
Actinomycetota
Nocardioides dokdonensis FR1436 [CP015079]
1463834
1463927
+
Ser
GCT
[Ensembl]
¡û
>W1610049467
BBEZ01000336
Actinomycetota
Nocardioides sp. AN3 [BBEZ]
318
411
+
Ser
GCT
[ENA]
¡û
>W1610051397
BBGV01000408
Actinomycetota
Nocardioides pyridinolyticus JCM 10369 [BBGV]
320
413
+
Ser
GCT
[ENA]
¡û
>W1610062567
BCNQ01000008
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
2173
2080
-
Ser
GCT
[ENA]
¡û
>W1610068467
BCRJ01000007
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
20243
20334
+
Ser
GCT
[ENA]
¡û
>W1610724070
LMDV01000009
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
260511
260418
-
Ser
GCT
[ENA]
¡û
>W1610726048
LMFI01000010
Actinomycetota
Nocardioides sp. Root140 [LMFI]
1627759
1627850
+
Ser
GCT
[ENA]
¡û
>W1610727248
LMGG01000001
Actinomycetota
Nocardioides sp. Root151 [LMGG]
1548139
1548048
-
Ser
GCT
[ENA]
¡û
>W1610727967
LMGV01000001
Actinomycetota
Nocardioides sp. Root614 [LMGV]
2165941
2165848
-
Ser
GCT
[ENA]
¡û
>W1610728661
LMHJ01000001
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
2212392
2212299
-
Ser
GCT
[ENA]
¡û
>W1610729468
LMIA01000007
Actinomycetota
Nocardioides sp. Root190 [LMIA]
123806
123899
+
Ser
GCT
[ENA]
¡û
>W1610730090
LMIN01000009
Actinomycetota
Nocardioides sp. Root224 [LMIN]
260510
260417
-
Ser
GCT
[ENA]
¡û
>W1610730173
LMIP01000011
Actinomycetota
Nocardioides sp. Root79 [LMIP]
692958
692867
-
Ser
GCT
[ENA]
¡û
>W1610730361
LMIT01000010
Actinomycetota
Nocardioides sp. Root240 [LMIT]
784445
784354
-
Ser
GCT
[ENA]
¡û
>W1610743058
LMSN01000016
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
337185
337092
-
Ser
GCT
[ENA]
¡û
>W1610743217
LMSQ01000002
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
14747
14656
-
Ser
GCT
[ENA]
¡û
>W1610743402
LMSU01000001
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
1724313
1724406
+
Ser
GCT
[ENA]
¡û
>W1610937828
LUPF01000062
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
5328
5421
+
Ser
GCT
[ENA]
¡û
>W1610937905
LUPH01000302
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
1855
1948
+
Ser
GCT
[ENA]
¡û
>W1610937940
LUPI01000064
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
6182
6275
+
Ser
GCT
[ENA]
¡û
>W1610937949
LUPJ01000009
Actinomycetota
Nocardioides sp. REDSEA-S31_B4 [LUPJ]
1856
1949
+
Ser
GCT
[ENA]
¡û
>W1610937999
LUPK01000026
Actinomycetota
Nocardioides sp. REDSEA-S33_B3 [LUPK]
6267
6360
+
Ser
GCT
[ENA]
¡û
>W1610938033
LUPL01000007
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
39467
39374
-
Ser
GCT
[ENA]
¡û
>W1610938110
LUPM01000436
Actinomycetota
Nocardioides sp. REDSEA-S36_B10 [LUPM]
1837
1930
+
Ser
GCT
[ENA]
¡û
>W1610938122
LUPN01000118
Actinomycetota
Nocardioides sp. REDSEA-S37_B12 [LUPN]
3276
3369
+
Ser
GCT
[ENA]
¡û
>W1610938161
LUPO01000018
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
6267
6360
+
Ser
GCT
[ENA]
¡û
>W1610938219
LUPP01000078
Actinomycetota
Nocardioides sp. REDSEA-S40_B4 [LUPP]
15810
15717
-
Ser
GCT
[ENA]
¡û
>W1610938238
LUPQ01000037
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
15818
15725
-
Ser
GCT
[ENA]
¡û
>W1710045866
BBEZ01000336
Actinomycetota
Nocardioides sp. AN3 [BBEZ]
318
411
+
Ser
GCT
[ENA]
¡û
>W1710047775
BBGV01000408
Actinomycetota
Nocardioides pyridinolyticus JCM 10369 [BBGV]
320
413
+
Ser
GCT
[ENA]
¡û
>W1710060043
BCNQ01000008
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
2173
2080
-
Ser
GCT
[ENA]
¡û
>W1710065840
BCRJ01000007
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
20243
20334
+
Ser
GCT
[ENA]
¡û
>W1710512561
FMZM01000014
Actinomycetota
Nocardioides lianchengensis [FMZM]
147080
146987
-
Ser
GCT
[ENA]
¡û
>W1710523596
FNIC01000010
Actinomycetota
Nocardioides szechwanensis [FNIC]
90273
90366
+
Ser
GCT
[ENA]
¡û
>W1710534300
FNRT01000002
Actinomycetota
Nocardioides exalbidus [FNRT]
1731684
1731591
-
Ser
GCT
[ENA]
¡û
>W1710555176
FOJD01000004
Actinomycetota
Austwickia chelonae [FOJD]
201616
201523
-
Ser
GCT
[ENA]
¡û
>W1710569388
FOUK01000001
Actinomycetota
Pimelobacter simplex [FOUK]
104987
105078
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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