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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.53397 (44 seq.)
>W1711027048
LRDC01000001
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
237731
237642
-
Ser
GGA
[ENA]
¡û
>C022021
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
2563375
2563286
-
Ser
GGA
[Ensembl]
¡û
>WENV182575656
OJFV01002922
[OJFV] seawater metagenome; Sea water
475
564
+
Ser
GGA
[ENA]
¡û
>WENV170646605
JQIA01000244
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
25788
25699
-
Ser
GGA
[ENA]
¡û
>WENV170704742
LLEM01002419
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
601
512
-
Ser
GGA
[ENA]
¡û
>WENV170704857
LLEN01004610
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
378
289
-
Ser
GGA
[ENA]
¡û
>WENV170780975
MAAB01028906
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
4712
4623
-
Ser
GGA
[ENA]
¡û
>WENV170781181
MAAB01029622
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
26585
26674
+
Ser
GGA
[ENA]
¡û
>WENV170782483
MAAC01010146
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
4713
4624
-
Ser
GGA
[ENA]
¡û
>WENV170782537
MAAC01010181
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
41596
41507
-
Ser
GGA
[ENA]
¡û
>W09103154
AAIV01000049
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
10459
10370
-
Ser
GGA
[ENA]
¡û
>C191117201
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
2414536
2414625
+
Ser
GGA
-
¡û
>C191173219
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
4716298
4716209
-
Ser
GGA
-
¡û
>C191185854
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
2099943
2100032
+
Ser
GGA
-
¡û
>C09109841
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
2729707
2729618
-
Ser
GGA
[Ensembl]
¡û
>W1810155295
PJAP01000214
Gammaproteobacteria
Shewanella sp. 11B5 [PJAP]
204
293
+
Ser
GGA
[ENA]
¡û
>W1810155940
PJAZ01000060
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
33773
33862
+
Ser
GGA
[ENA]
¡û
>W1810156285
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
1441800
1441711
-
Ser
GGA
[ENA]
¡û
>W1810156714
PJBL01000026
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
44298
44209
-
Ser
GGA
[ENA]
¡û
>W1810156772
PJBM01000192
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
1534
1623
+
Ser
GGA
[ENA]
¡û
>W1810157765
PJCD01000003
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
1039316
1039405
+
Ser
GGA
[ENA]
¡û
>W1810157844
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
740289
740378
+
Ser
GGA
[ENA]
¡û
>W2010734392
JACJDU010000003
Gammaproteobacteria
Shewanella sp. SR44-4 [JACJDU]
200572
200483
-
Ser
GGA
[ENA]
¡û
>W2010734704
JACJDX010000007
Gammaproteobacteria
Shewanella sp. SR43-8 [JACJDX]
41431
41520
+
Ser
GGA
[ENA]
¡û
>W2010735076
JACJEB010000004
Gammaproteobacteria
Shewanella sp. SR43-4 [JACJEB]
41407
41496
+
Ser
GGA
[ENA]
¡û
>W2010735846
JACJEJ010000316
Gammaproteobacteria
Shewanella sp. SR41-2 [JACJEJ]
2664
2753
+
Ser
GGA
[ENA]
¡û
>W2010736592
JACJER010000081
Gammaproteobacteria
Shewanella sp. SG44-6 [JACJER]
19906
19817
-
Ser
GGA
[ENA]
¡û
>W2010736836
JACJEU010000001
Gammaproteobacteria
Shewanella sp. SG44-2 [JACJEU]
140893
140804
-
Ser
GGA
[ENA]
¡û
>W2010738238
JACJFI010000025
Gammaproteobacteria
Shewanella sp. SG41-4 [JACJFI]
26733
26822
+
Ser
GGA
[ENA]
¡û
>W2010738353
JACJFJ010000005
Gammaproteobacteria
Shewanella sp. SG41-3 [JACJFJ]
159470
159559
+
Ser
GGA
[ENA]
¡û
>W2011451084
RKKB01000004
Gammaproteobacteria
Shewanella sp. R106 [RKKB]
119851
119940
+
Ser
GGA
[ENA]
¡û
>W2011451154
RKKC01000005
Gammaproteobacteria
Shewanella frigidimarina KCCM 41815 [RKKC]
28597
28508
-
Ser
GGA
[ENA]
¡û
>W2011451212
RKKD01000001
Gammaproteobacteria
Shewanella vesiculosa LMG 24424 [RKKD]
60972
61061
+
Ser
GGA
[ENA]
¡û
>W2011451346
RKKE01000003
Gammaproteobacteria
Shewanella arctica Kim et al. 2012 KCTC 23109 [RKKE]
345632
345543
-
Ser
GGA
[ENA]
¡û
>W2012430706
WSRZ01000018
Gammaproteobacteria
Shewanella litoralis JCM 32306 [WSRZ]
8867
8956
+
Ser
GGA
[ENA]
¡û
>W2110036587
BMQI01000005
Gammaproteobacteria
Shewanella algicola JCM 31091 [BMQI]
82611
82700
+
Ser
GGA
[ENA]
¡û
>W2110037262
BMQV01000001
Gammaproteobacteria
Shewanella saliphila JCM 32304 [BMQV]
114432
114343
-
Ser
GGA
[ENA]
¡û
>W2110037464
BMQX01000017
Gammaproteobacteria
Shewanella litoralis JCM 32306 [BMQX]
8867
8956
+
Ser
GGA
[ENA]
¡û
>W2110069246
BPEW01000004
Gammaproteobacteria
Shewanella sp. c952 [BPEW]
66111
66022
-
Ser
GGA
[ENA]
¡û
>W2110180770
JABKAW020000001
Gammaproteobacteria
Shewanella sp. BF02_Schw [JABKAW]
1384912
1385001
+
Ser
GGA
[ENA]
¡û
>C201211353
CP048031
Gammaproteobacteria
Shewanella sp. Arc9-LZ [CP048031]
2669812
2669723
-
Ser
GGA
-
¡û
>C211247869
CP068437
Gammaproteobacteria
Shewanella sp. KX20019 [CP068437]
2601105
2601194
+
Ser
GGA
-
¡û
>C231131362
CP073588
Gammaproteobacteria
Shewanella vesiculosa M7 [CP073588]
1321455
1321366
-
Ser
GGA
-
¡û
>W1610875160
LRDC01000001
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
237731
237642
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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