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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001803)
Anticodon = GCG
HIT:
30 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237281 (3 seq.)
>WENV170603274
FUWD010297995
[FUWD] metagenome; unknown
619
541
-
Arg
GCG
[ENA]
¢þ
>SRA1017453
SRR035082.141756
454 Sequencing (SRP001803)
118
40
-
Arg
GCG
[SRA]
>SRA1044467
SRR035092.285319
454 Sequencing (SRP001813)
261
183
-
Arg
GCG
[SRA]
Identical group No.244496 (6 seq.)
>WENV170620841
FUWD013041031
[FUWD] metagenome; unknown
947
1024
+
Arg
GCG
[ENA]
¢þ
>WENV170628996
FUWD013258121
[FUWD] metagenome; unknown
2903
2826
-
Arg
GCG
[ENA]
¢þ
>SRA1018830
SRR035082.354343
454 Sequencing (SRP001803)
217
140
-
Arg
GCG
[SRA]
>SRA1030645
SRR035087.308797
454 Sequencing (SRP001808)
70
147
+
Arg
GCG
[SRA]
>SRA1040071
SRR035091.30673
454 Sequencing (SRP001812)
181
258
+
Arg
GCG
[SRA]
>SRA1044379
SRR035092.270893
454 Sequencing (SRP001813)
85
8
-
Arg
GCG
[SRA]
Identical group No.272927 (7 seq.)
>WENV170602330
FUWD010226790
[FUWD] metagenome; unknown
257
181
-
Arg
GCG
[ENA]
¢þ
>WENV170622793
FUWD013121141
[FUWD] metagenome; unknown
961
1037
+
Arg
GCG
[ENA]
¢þ
>WENV170631006
FUWD013334893
[FUWD] metagenome; unknown
961
1037
+
Arg
GCG
[ENA]
¢þ
>SRA1017166
SRR035082.92167
454 Sequencing (SRP001803)
284
208
-
Arg
GCG
[SRA]
>SRA1019452
SRR035082.459112
454 Sequencing (SRP001803)
334
258
-
Arg
GCG
[SRA]
>SRA1029778
SRR035087.180138
454 Sequencing (SRP001808)
397
321
-
Arg
GCG
[SRA]
>SRA1036604
SRR035089.560196
454 Sequencing (SRP001810)
332
256
-
Arg
GCG
[SRA]
Identical group No.272941 (4 seq.)
>WENV170612345
FUWD012582798
[FUWD] metagenome; unknown
243
167
-
Arg
GCG
[ENA]
¢þ
>SRA1019645
SRR035082.494849
454 Sequencing (SRP001803)
107
31
-
Arg
GCG
[SRA]
>SRA1036671
SRR035089.579250
454 Sequencing (SRP001810)
243
167
-
Arg
GCG
[SRA]
>SRA1044035
SRR035092.212367
454 Sequencing (SRP001813)
101
25
-
Arg
GCG
[SRA]
Identical group No.358728 (3 seq.)
>WENV170622016
FUWD013084120
[FUWD] metagenome; unknown
637
711
+
Arg
GCG
[ENA]
¢þ
>WENV170630219
FUWD013299288
[FUWD] metagenome; unknown
637
711
+
Arg
GCG
[ENA]
¢þ
>SRA1019592
SRR035082.483722
454 Sequencing (SRP001803)
4
78
+
Arg
GCG
[SRA]
Identical group No.358793 (4 seq.)
>WENV170623037
FUWD013133888
[FUWD] metagenome; unknown
899
823
-
Arg
GCG
[ENA]
¢þ
>WENV170631271
FUWD013346934
[FUWD] metagenome; unknown
899
823
-
Arg
GCG
[ENA]
¢þ
>SRA1018224
SRR035082.258329
454 Sequencing (SRP001803)
204
128
-
Arg
GCG
[SRA]
>SRA1040241
SRR035091.64639
454 Sequencing (SRP001812)
138
62
-
Arg
GCG
[SRA]
Identical group No.358874 (19 seq.)
>WENV170624311
FUWD013179602
[FUWD] metagenome; unknown
3430
3506
+
Arg
GCG
[ENA]
¢þ
>WENV170632598
FUWD013384921
[FUWD] metagenome; unknown
3430
3506
+
Arg
GCG
[ENA]
¢þ
>SRA1018549
SRR035082.308810
454 Sequencing (SRP001803)
361
437
+
Arg
GCG
[SRA]
>SRA1018615
SRR035082.322433
454 Sequencing (SRP001803)
293
217
-
Arg
GCG
[SRA]
>SRA1033830
SRR035088.368272
454 Sequencing (SRP001809)
288
212
-
Arg
GCG
[SRA]
>SRA1039979
SRR035091.8881
454 Sequencing (SRP001812)
20
96
+
Arg
GCG
[SRA]
>SRA1040335
SRR035091.80670
454 Sequencing (SRP001812)
410
334
-
Arg
GCG
[SRA]
>SRA1040364
SRR035091.85167
454 Sequencing (SRP001812)
239
315
+
Arg
GCG
[SRA]
>SRA1040753
SRR035091.143597
454 Sequencing (SRP001812)
206
130
-
Arg
GCG
[SRA]
>SRA1040866
SRR035091.160897
454 Sequencing (SRP001812)
144
68
-
Arg
GCG
[SRA]
>SRA1041203
SRR035091.213004
454 Sequencing (SRP001812)
157
81
-
Arg
GCG
[SRA]
>SRA1041844
SRR035091.303898
454 Sequencing (SRP001812)
80
4
-
Arg
GCG
[SRA]
>SRA1041896
SRR035091.312805
454 Sequencing (SRP001812)
47
123
+
Arg
GCG
[SRA]
>SRA1042949
SRR035091.472250
454 Sequencing (SRP001812)
100
176
+
Arg
GCG
[SRA]
>SRA1042989
SRR035092.15941
454 Sequencing (SRP001813)
363
287
-
Arg
GCG
[SRA]
>SRA1043930
SRR035092.196474
454 Sequencing (SRP001813)
209
285
+
Arg
GCG
[SRA]
>SRA1044761
SRR035092.335993
454 Sequencing (SRP001813)
344
420
+
Arg
GCG
[SRA]
>SRA1048063
SRR035094.101345
454 Sequencing (SRP001815)
183
107
-
Arg
GCG
[SRA]
>SRA1048648
SRR035094.216176
454 Sequencing (SRP001815)
89
13
-
Arg
GCG
[SRA]
Identical group No.439660 (1 seq.)
>SRA1016937
SRR035082.56393
454 Sequencing (SRP001803)
115
39
-
Arg
GCG
[SRA]
Identical group No.547805 (3 seq.)
>WENV170605136
FUWD010453442
[FUWD] metagenome; unknown
155
82
-
Arg
GCG
[ENA]
¢þ
>SRA1017006
SRR035082.67926
454 Sequencing (SRP001803)
263
190
-
Arg
GCG
[SRA]
>SRA1041047
SRR035091.187509
454 Sequencing (SRP001812)
160
87
-
Arg
GCG
[SRA]
Identical group No.548274 (2 seq.)
>WENV170611530
FUWD012341585
[FUWD] metagenome; unknown
5
78
+
Arg
GCG
[ENA]
¢þ
>SRA1017495
SRR035082.149513
454 Sequencing (SRP001803)
428
501
+
Arg
GCG
[SRA]
Identical group No.672605 (5 seq.)
>WENV170612662
FUWD012653549
[FUWD] metagenome; unknown
264
337
+
Arg
GCG
[ENA]
¢þ
>SRA1017949
SRR035082.218806
454 Sequencing (SRP001803)
26
99
+
Arg
GCG
[SRA]
>SRA1018105
SRR035082.241239
454 Sequencing (SRP001803)
130
203
+
Arg
GCG
[SRA]
>SRA1031835
SRR035087.496807
454 Sequencing (SRP001808)
217
144
-
Arg
GCG
[SRA]
>SRA1044517
SRR035092.292750
454 Sequencing (SRP001813)
264
337
+
Arg
GCG
[SRA]
Identical group No.710556 (4 seq.)
>WENV170602319
FUWD010226255
[FUWD] metagenome; unknown
454
528
+
Arg
GCG
[ENA]
¢þ
>SRA1017395
SRR035082.132668
454 Sequencing (SRP001803)
338
412
+
Arg
GCG
[SRA]
>SRA1019557
SRR035082.476068
454 Sequencing (SRP001803)
207
281
+
Arg
GCG
[SRA]
>SRA1042716
SRR035091.435013
454 Sequencing (SRP001812)
318
244
-
Arg
GCG
[SRA]
Identical group No.710798 (3 seq.)
>W131193267
ASNW01000015
Unclassified
Parcubacteria bacterium SCGC AB-164-E21 OD1 bacterium SCGC AB-164-E21 [ASNW]
4509
4436
-
Arg
GCG
[ENA]
¡û
>WENV170608016
FUWD010883177
[FUWD] metagenome; unknown
71
142
+
Arg
GCG
[ENA]
¢þ
>SRA1018205
SRR035082.255575
454 Sequencing (SRP001803)
113
42
-
Arg
GCG
[SRA]
Identical group No.710811 (9 seq.)
>WENV170608117
FUWD010894958
[FUWD] metagenome; unknown
577
503
-
Arg
GCG
[ENA]
¢þ
>WENV170622806
FUWD013121451
[FUWD] metagenome; unknown
388
462
+
Arg
GCG
[ENA]
¢þ
>WENV170631020
FUWD013335176
[FUWD] metagenome; unknown
388
462
+
Arg
GCG
[ENA]
¢þ
>SRA1018927
SRR035082.371334
454 Sequencing (SRP001803)
132
206
+
Arg
GCG
[SRA]
>SRA1034066
SRR035088.472578
454 Sequencing (SRP001809)
81
7
-
Arg
GCG
[SRA]
>SRA1041347
SRR035091.230435
454 Sequencing (SRP001812)
77
151
+
Arg
GCG
[SRA]
>SRA1042610
SRR035091.415706
454 Sequencing (SRP001812)
333
407
+
Arg
GCG
[SRA]
>SRA1042640
SRR035091.421842
454 Sequencing (SRP001812)
77
151
+
Arg
GCG
[SRA]
>SRA1042904
SRR035091.464873
454 Sequencing (SRP001812)
82
156
+
Arg
GCG
[SRA]
Identical group No.711021 (2 seq.)
>WENV170611517
FUWD012337280
[FUWD] metagenome; unknown
162
91
-
Arg
GCG
[ENA]
¢þ
>SRA1017293
SRR035082.113348
454 Sequencing (SRP001803)
341
270
-
Arg
GCG
[SRA]
Identical group No.711106 (5 seq.)
>WENV170612645
FUWD012650165
[FUWD] metagenome; unknown
163
235
+
Arg
GCG
[ENA]
¢þ
>SRA1018226
SRR035082.258337
454 Sequencing (SRP001803)
137
209
+
Arg
GCG
[SRA]
>SRA1041596
SRR035091.267892
454 Sequencing (SRP001812)
305
379
+
Arg
GCG
[SRA]
>SRA1044131
SRR035092.228757
454 Sequencing (SRP001813)
169
241
+
Arg
GCG
[SRA]
>SRA1047906
SRR035094.65164
454 Sequencing (SRP001815)
27
101
+
Arg
GCG
[SRA]
Identical group No.771074 (2 seq.)
>SRA1016816
SRR035082.36308
454 Sequencing (SRP001803)
22
94
+
Arg
GCG
[SRA]
>SRA1018156
SRR035082.248572
454 Sequencing (SRP001803)
190
118
-
Arg
GCG
[SRA]
Identical group No.771075 (1 seq.)
>SRA1016818
SRR035082.36659
454 Sequencing (SRP001803)
291
219
-
Arg
GCG
[SRA]
Identical group No.771135 (1 seq.)
>SRA1017334
SRR035082.120283
454 Sequencing (SRP001803)
62
136
+
Arg
GCG
[SRA]
Identical group No.771171 (1 seq.)
>SRA1017766
SRR035082.193014
454 Sequencing (SRP001803)
331
259
-
Arg
GCG
[SRA]
Identical group No.771198 (1 seq.)
>SRA1018092
SRR035082.239564
454 Sequencing (SRP001803)
143
216
+
Arg
GCG
[SRA]
Identical group No.771215 (1 seq.)
>SRA1018254
SRR035082.264313
454 Sequencing (SRP001803)
107
181
+
Arg
GCG
[SRA]
Identical group No.771216 (1 seq.)
>SRA1018262
SRR035082.264977
454 Sequencing (SRP001803)
227
299
+
Arg
GCG
[SRA]
Identical group No.771225 (1 seq.)
>SRA1018319
SRR035082.272672
454 Sequencing (SRP001803)
135
208
+
Arg
GCG
[SRA]
Identical group No.771234 (1 seq.)
>SRA1018416
SRR035082.288698
454 Sequencing (SRP001803)
50
124
+
Arg
GCG
[SRA]
Identical group No.771252 (1 seq.)
>SRA1018560
SRR035082.311017
454 Sequencing (SRP001803)
232
158
-
Arg
GCG
[SRA]
Identical group No.771253 (1 seq.)
>SRA1018570
SRR035082.312606
454 Sequencing (SRP001803)
415
343
-
Arg
GCG
[SRA]
Identical group No.771321 (1 seq.)
>SRA1019374
SRR035082.444578
454 Sequencing (SRP001803)
396
324
-
Arg
GCG
[SRA]
Identical group No.771330 (1 seq.)
>SRA1019485
SRR035082.465048
454 Sequencing (SRP001803)
376
448
+
Arg
GCG
[SRA]
Identical group No.771348 (1 seq.)
>SRA1019700
SRR035082.507347
454 Sequencing (SRP001803)
209
135
-
Arg
GCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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