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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = GCA
HIT:
45 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49597 (1 seq.)
>SRA1029987
SRR035087.212091
454 Sequencing (SRP001808)
113
202
+
Cys
GCA
[SRA]
Identical group No.90566 (1 seq.)
>SRA1030503
SRR035087.288450
454 Sequencing (SRP001808)
281
194
-
Cys
GCA
[SRA]
Identical group No.235662 (1 seq.)
>SRA1031340
SRR035087.414885
454 Sequencing (SRP001808)
175
97
-
Cys
GCA
[SRA]
Identical group No.244518 (1 seq.)
>SRA1031231
SRR035087.395836
454 Sequencing (SRP001808)
472
398
-
Cys
GCA
[SRA]
Identical group No.244542 (1 seq.)
>SRA1031804
SRR035087.491997
454 Sequencing (SRP001808)
80
6
-
Cys
GCA
[SRA]
Identical group No.300410 (3 seq.)
>SRA1029831
SRR035087.189232
454 Sequencing (SRP001808)
124
200
+
Cys
GCA
[SRA]
>SRA1030034
SRR035087.219044
454 Sequencing (SRP001808)
124
200
+
Cys
GCA
[SRA]
>SRA1030265
SRR035087.252175
454 Sequencing (SRP001808)
123
199
+
Cys
GCA
[SRA]
Identical group No.300592 (1 seq.)
>SRA1030935
SRR035087.352157
454 Sequencing (SRP001808)
391
464
+
Cys
GCA
[SRA]
Identical group No.300628 (1 seq.)
>SRA1031148
SRR035087.379960
454 Sequencing (SRP001808)
180
254
+
Cys
GCA
[SRA]
Identical group No.300700 (1 seq.)
>SRA1031560
SRR035087.449997
454 Sequencing (SRP001808)
309
233
-
Cys
GCA
[SRA]
Identical group No.300755 (1 seq.)
>SRA1031960
SRR035087.520986
454 Sequencing (SRP001808)
124
197
+
Cys
GCA
[SRA]
Identical group No.484084 (1 seq.)
>SRA1029084
SRR035087.70181
454 Sequencing (SRP001808)
399
471
+
Cys
GCA
[SRA]
Identical group No.484260 (1 seq.)
>SRA1030146
SRR035087.233333
454 Sequencing (SRP001808)
348
276
-
Cys
GCA
[SRA]
Identical group No.484291 (1 seq.)
>SRA1030381
SRR035087.272145
454 Sequencing (SRP001808)
275
203
-
Cys
GCA
[SRA]
Identical group No.484342 (1 seq.)
>SRA1030744
SRR035087.324835
454 Sequencing (SRP001808)
302
374
+
Cys
GCA
[SRA]
Identical group No.484391 (1 seq.)
>SRA1031036
SRR035087.363016
454 Sequencing (SRP001808)
23
98
+
Cys
GCA
[SRA]
Identical group No.484401 (1 seq.)
>SRA1031145
SRR035087.379908
454 Sequencing (SRP001808)
173
250
+
Cys
GCA
[SRA]
Identical group No.484538 (1 seq.)
>SRA1032101
SRR035087.552496
454 Sequencing (SRP001808)
178
253
+
Cys
GCA
[SRA]
Identical group No.484798 (1 seq.)
>SRA1028989
SRR035087.54473
454 Sequencing (SRP001808)
224
297
+
Cys
GCA
[SRA]
Identical group No.672237 (1 seq.)
>SRA1028800
SRR035087.10256
454 Sequencing (SRP001808)
151
77
-
Cys
GCA
[SRA]
Identical group No.672267 (1 seq.)
>SRA1029022
SRR035087.59982
454 Sequencing (SRP001808)
207
278
+
Cys
GCA
[SRA]
Identical group No.672278 (1 seq.)
>SRA1029077
SRR035087.69514
454 Sequencing (SRP001808)
181
255
+
Cys
GCA
[SRA]
Identical group No.672284 (1 seq.)
>SRA1029096
SRR035087.71790
454 Sequencing (SRP001808)
6
80
+
Cys
GCA
[SRA]
Identical group No.672285 (1 seq.)
>SRA1029129
SRR035087.78932
454 Sequencing (SRP001808)
118
192
+
Cys
GCA
[SRA]
Identical group No.672288 (2 seq.)
>SRA1029163
SRR035087.85454
454 Sequencing (SRP001808)
276
347
+
Cys
GCA
[SRA]
>SRA1029927
SRR035087.203376
454 Sequencing (SRP001808)
232
161
-
Cys
GCA
[SRA]
Identical group No.672291 (1 seq.)
>SRA1029173
SRR035087.87338
454 Sequencing (SRP001808)
30
104
+
Cys
GCA
[SRA]
Identical group No.672446 (1 seq.)
>SRA1030433
SRR035087.279248
454 Sequencing (SRP001808)
188
260
+
Cys
GCA
[SRA]
Identical group No.672502 (1 seq.)
>SRA1030982
SRR035087.357249
454 Sequencing (SRP001808)
216
142
-
Cys
GCA
[SRA]
Identical group No.672514 (1 seq.)
>SRA1031048
SRR035087.364477
454 Sequencing (SRP001808)
111
185
+
Cys
GCA
[SRA]
Identical group No.672527 (1 seq.)
>SRA1031135
SRR035087.379140
454 Sequencing (SRP001808)
122
50
-
Cys
GCA
[SRA]
Identical group No.672552 (1 seq.)
>SRA1031365
SRR035087.419957
454 Sequencing (SRP001808)
110
38
-
Cys
GCA
[SRA]
Identical group No.672573 (1 seq.)
>SRA1031546
SRR035087.447672
454 Sequencing (SRP001808)
331
405
+
Cys
GCA
[SRA]
Identical group No.672612 (1 seq.)
>SRA1031915
SRR035087.511312
454 Sequencing (SRP001808)
148
77
-
Cys
GCA
[SRA]
Identical group No.672626 (1 seq.)
>SRA1032002
SRR035087.529284
454 Sequencing (SRP001808)
124
198
+
Cys
GCA
[SRA]
Identical group No.672650 (1 seq.)
>SRA1032250
SRR035087.587714
454 Sequencing (SRP001808)
393
319
-
Cys
GCA
[SRA]
Identical group No.672652 (1 seq.)
>SRA1032264
SRR035087.590950
454 Sequencing (SRP001808)
187
116
-
Cys
GCA
[SRA]
Identical group No.672793 (1 seq.)
>SRA1030536
SRR035087.291465
454 Sequencing (SRP001808)
159
85
-
Cys
GCA
[SRA]
Identical group No.788024 (1 seq.)
>SRA1029153
SRR035087.83410
454 Sequencing (SRP001808)
125
52
-
Cys
GCA
[SRA]
Identical group No.788035 (1 seq.)
>SRA1029264
SRR035087.99664
454 Sequencing (SRP001808)
227
156
-
Cys
GCA
[SRA]
Identical group No.788081 (1 seq.)
>SRA1029946
SRR035087.205693
454 Sequencing (SRP001808)
415
485
+
Cys
GCA
[SRA]
Identical group No.788084 (1 seq.)
>SRA1029973
SRR035087.210341
454 Sequencing (SRP001808)
146
74
-
Cys
GCA
[SRA]
Identical group No.788099 (1 seq.)
>SRA1030223
SRR035087.245197
454 Sequencing (SRP001808)
40
110
+
Cys
GCA
[SRA]
Identical group No.788106 (1 seq.)
>SRA1030286
SRR035087.256154
454 Sequencing (SRP001808)
213
283
+
Cys
GCA
[SRA]
Identical group No.788193 (1 seq.)
>SRA1031761
SRR035087.483111
454 Sequencing (SRP001808)
75
146
+
Cys
GCA
[SRA]
Identical group No.788217 (1 seq.)
>SRA1032064
SRR035087.542521
454 Sequencing (SRP001808)
109
36
-
Cys
GCA
[SRA]
Identical group No.788335 (1 seq.)
>SRA1031003
SRR035087.359115
454 Sequencing (SRP001808)
213
143
-
Cys
GCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK